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Issues list

Make sure no organoid data is in hra-pop
#115 opened Dec 2, 2024 by andreasbueckle
@andreasbueckle @bherr2
1
Compare v0.10.3 vs. v0.11.1
#114 opened Nov 4, 2024 by andreasbueckle Paper Submission
Add renal pelvis to AS for kidney
#112 opened Sep 18, 2024 by andreasbueckle
5
Get KPMP and GUDMAP data and process it in HRApop
#111 opened Sep 17, 2024 by andreasbueckle Paper Submission
Explore data from Atlas-D2K for inclusion in hra-pop
#110 opened Sep 13, 2024 by andreasbueckle
1 task
@andreasbueckle
Rename sankey.csv to dataset-metadata-for-sankey.csv
#108 opened Sep 12, 2024 by andreasbueckle Paper Submission
@bherr2
🐛 Correct extraction sites 0 mesh AS collisions and sex mismatches bug Something isn't working
#107 opened Sep 4, 2024 by andreasbueckle Paper Submission
@danqaurooni
2
🐛 Need list of cell types that are not supposed to be in organ model bug Something isn't working
#106 opened Sep 4, 2024 by andreasbueckle Paper Submission
1
Check correctness of collisions of extraction sites in nested AS
#104 opened Aug 22, 2024 by andreasbueckle
@bherr2
Sanity check: Compare %AS in each corridor to %AS in related extraction site
#103 opened Aug 20, 2024 by andreasbueckle
Update query for Supplemental table in marker paper clarification needed
#102 opened Aug 20, 2024 by andreasbueckle
@bherr2
4
Prepare data for validation specification needed
#100 opened Aug 14, 2024 by andreasbueckle Paper Submission
@andreasbueckle
11
🐛 Found instance of HuBMAP dataset in wrong as-cell-summary bug Something isn't working
#99 opened Aug 13, 2024 by andreasbueckle Expert validation
@bherr2
1
Consider separating as-cell-summaries by laterality clarification needed
#98 opened Aug 5, 2024 by andreasbueckle
3
Get protein B marker values for sc-proteomics datasets clarification needed
#97 opened Aug 5, 2024 by andreasbueckle
1
Consider separating as-cell-summaries by sceneGraphNode clarification needed
#96 opened Jul 24, 2024 by andreasbueckle Paper Submission
@andreasbueckle @bherr2
3
2 atlas SenNet datasets do not show values in cell_type_annotation_tool bug Something isn't working
#91 opened Jun 6, 2024 by andreasbueckle Paper Submission
@bherr2
2
Dashboard graphs for hra-pop specification needed
#90 opened May 24, 2024 by andreasbueckle
Add developmental_stage to the graph in the next HRA release (post 2.1)
#89 opened May 23, 2024 by andreasbueckle
@bherr2
Need atlas and non-atlas data for Sankey diagram
#88 opened May 21, 2024 by andreasbueckle Paper Submission
@bherr2
Add disclaimer: Some atlas extraction sites do not have mesh collisions
#80 opened Mar 25, 2024 by andreasbueckle Paper Submission
@andreasbueckle
New long table for UMAP plot for biomarkers
#79 opened Mar 25, 2024 by andreasbueckle Paper Submission
1
skin and skin of body as as_label in v2p1
#77 opened Mar 15, 2024 by andreasbueckle
@bherr2
1
Make report for datasets with unsupported organs
#75 opened Mar 7, 2024 by andreasbueckle
@andreasbueckle @bherr2
Need report for datasets with <100 cells
#72 opened Mar 1, 2024 by andreasbueckle Paper Submission
1
ProTip! Updated in the last three days: updated:>2024-12-23.