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Need atlas and non-atlas data for Sankey diagram #88

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andreasbueckle opened this issue May 21, 2024 · 0 comments
Open

Need atlas and non-atlas data for Sankey diagram #88

andreasbueckle opened this issue May 21, 2024 · 0 comments
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@andreasbueckle
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andreasbueckle commented May 21, 2024

The Sankey diagram should now show all dataset from the universe. The table below contains headers for each diamond. A screenshot of the current Sankey diagram is below. The data used for it is: https://github.com/x-atlas-consortia/hra-pop/blob/main/output-data/v0.10.2/reports/atlas/table-s1.csv

Let's re-use all columns but change:
link_to_raw_data -> link_to_h5ad_file
bulk_or_spatial -> sc_transcriptomics_or_sc_proteomics

I suggested we add the following columns:
is_rui_registered | is_atlas_dataset

The new columns (is_rui_registered,is_atlas_dataset) are technically not needed (could be checked through other columns), but it would be good to be explicit in this data table.

image

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