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skin and skin of body as as_label in v2p1 #77

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andreasbueckle opened this issue Mar 15, 2024 · 1 comment
Open

skin and skin of body as as_label in v2p1 #77

andreasbueckle opened this issue Mar 15, 2024 · 1 comment
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@andreasbueckle
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@bherr2 @axdanbol
While visualizing the v2p1 CSV at https://github.com/x-atlas-consortia/hra-pop/blob/main/output-data/v0.9.0/reports/atlas/validation-v2p1.csv, I noticed that the as_label for skin has two unique values: skin and skin of body. Any idea why? This seems to occur where modality is popV or sc_proteomics. Affected rows are identical with skin rows above/below except for the as_label.

The query is at https://github.com/x-atlas-consortia/hra-pop/blob/main/queries/atlas/validation-v2p1.rq

@andreasbueckle
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Explanation: UBERON says skin of body, ccf-pref-label says skin, 3d ref organ labels in ccf.owl say skin, hra-kg says skin of body. No easy solution.

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