🐛 Correct extraction sites 0 mesh AS collisions and sex mismatches

[andreasbueckle]

1. sex mismatches between donor and reference organ (extraction site): https://apps.humanatlas.io/api/grlc/ccf.html#get-/sex-mismatches
2. Cross-check registration dashboard with this CSV that lists HRApop atlas datasets with NA mesh of BB collisions: https://github.com/cns-iu/hra-cell-type-populations-supporting-information/blob/main/validations/TEMP/output/with_na_collisions.csv

[danqaurooni]

Re 0 mesh collisions, all JSONs have since been replaced by correct versions by Bill Shirey, except the two below (so 23-2=21 fixed in total). The two broken datasets

• https://entity.api.hubmapconsortium.org/entities/2ae126ab16c264352b2d3d2607236b97
• https://entity.api.hubmapconsortium.org/entities/40b8449d2e4edbf2168dfadaefd0ffe4

Come from a small intestine tissue block registered by Daniel Cotter:

https://portal.hubmapconsortium.org/browse/sample/f7b37eff8a36eb3852a373cc4878f50e

I wrote to Emma Marie Monte about this and she responded that they would fix this eventually but are currently swamped. I can ping her again if urgent.

-Dan

[andreasbueckle]

Thanks for the update! Could you please ping her again. We want this to be the last complete run before the paper.