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36 Open 125 Closed
36 Open 125 Closed
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Issues list

Constrained topology for ancestral reconstruction
#200 opened Nov 29, 2024 by Proginski
PROBLEM TO EXPORT THE TREE
#199 opened Nov 19, 2024 by Deronkof
how to enable AVX?
#198 opened Sep 29, 2024 by liamxg
1
How can I determine the optimal number of substitution rate categories to use?
#197 opened Aug 19, 2024 by liamxg
3
which parameters should I use with the "lot of missing data"?
#195 opened Aug 7, 2024 by liamxg
2
running error
#192 opened Apr 18, 2024 by ceceNo1
phytime compilation error
#191 opened Apr 10, 2024 by pavelToman
2
Smart Model Selection
#190 opened Mar 25, 2024 by JamieBregman
2
error
#189 opened Jan 17, 2024 by liamxg
Building the BioNJ trees
#181 opened Mar 24, 2023 by KYQiu21
5
issue with mpirun after updating to Ubuntu 22
#179 opened Nov 24, 2022 by fermza
21
Optimized branch lengths flag for user tree does not work properly
#175 opened Sep 13, 2022 by GhJowkar
build with --disable-native fails
#173 opened Aug 8, 2022 by rekado
3
Error runing phytime
#172 opened Jul 11, 2022 by biozhajie
Encountered an issue while loading the XML file with phytime
#170 opened Jul 7, 2022 by biozhajie
PhyML Compiling Error on Windows (MSYS2)
#167 opened May 18, 2022 by amduffy
2
phytime fails to compile
#166 opened May 13, 2022 by V-Z
2
Parallelizing PhyML bootstrapping
#149 opened Jul 23, 2021 by sevance
2
sequence ancestor reconstruction outputs protein ancs sequences with residues instead of gaps
#140 opened Feb 11, 2021 by famotsuka
PhyML run with constrained tree
#139 opened Feb 5, 2021 by fxjonas
1
phyML results unnormal
#138 opened Jan 28, 2021 by lwlwx
Remove "adaptive tuning parameters" wherever they are (PhyREX)
#137 opened Nov 23, 2020 by stephaneguindon
Memory error when using phyml with a custom model
#135 opened Oct 26, 2020 by halabikeren
3
core dumped phytime on my dataset
#134 opened Oct 6, 2020 by Jigyasa3
How to optimize the init.values of rates for a dataset or default values are okay?
#133 opened Oct 1, 2020 by Jigyasa3
ProTip! Exclude everything labeled bug with -label:bug.