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Multiscale
- Model an injection in HemeLB either through an inlet or by creating fluid in certain places.
- HemeLB Thrombus
- HemeLB - HemeLB coupling
- HemeLB - PyNS coupling (arch project)
- HemeLB - Jussi Timonen's particle code coupling
- HemeLB - Thrombus coupling
1A: Couple PyNS with PyNS using the MPWide Python API.
- Develop Python API for MPWide.
- Model individual sections of the Circle of Willis using different instances of PyNS.
- Develop the coupling mechanism in PyNS.
- Define a mechanism to specify coupling boundaries for PyNS.
1B: Couple HemeLB with HemeLB using the MPWide Intercommunicator.
- Write the intercommunicator.
- Define and test a simple coupling problem (e.g. long cylinder).
- Define and test a realistic coupling problem.
2A: Developing HemeLB - PyNS coupling
2B: Deploying the coupling on a production infrastructure and testing/optimizing the coupling performance (start of a CS paper?)
2C: Initial Validation of the coupling mechanisms for physical correctness
- Should result in a number of suggestions for improvement.
''' (Optional: get started on some of the general ideas mentioned above?) e.g.:
- HemeLB - Jussi Timonen's particle code coupling
- HemeLB - Thrombus coupling
The influence of contrastagentinjection on physiologicalflow in the circle of Willis G. Mulder, A.C.B. Bogaerds, P. Rongen, F.N. van de Vosse http://www.sciencedirect.com/science/article/pii/S1350453310002171
Modelling the circle of Willis to assess the effects of anatomical variations and occlusions on cerebral flows J. Alastrueya, K.H. Parker, J. Peiróa, S.M. Byrdc, S.J. Sherwina http://www.sciencedirect.com/science/article/pii/S0021929006002946
Validation of a one-dimensional model of the systemic arterial tree Philippe Reymond, Fabrice Merenda, Fabienne Perren, Daniel Rüfenacht, and Nikos Stergiopulos http://ajpheart.physiology.org/content/297/1/H208.short