generated from bokulich-lab/q2-plugin-template
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kraken2‐to‐features
Santiago Castro Dau edited this page Apr 23, 2024
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Convert a Kraken 2 report, which is an annotated NCBI taxonomy tree into generic artifacts for downstream analyses.
For the full description of the action's inputs, outputs and parameters run
qiime moshpit kraken2‐to‐features --helpin the terminal.
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reports(SampleData[Kraken2Reports]): Per-sample Kraken 2 reports.
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table(FeatureTable[PresenceAbsence]): A presence/absence table of selected features. The features are not of even ranks, but will be the most specific rank available. -
taxonomy(FeatureData[Taxonomy]): Infra-clade ranks are ignored unless they are strain-level. Missing internal ranks are annotated by their next most specific rank, with the exception of k__Bacteria and k__Archaea which match their domain's name.