bin‐contigs‐metabat

This method uses MetaBAT 2 to bin contigs into MAGs.

For the full description of the action's inputs, outputs and parameters run qiime moshpit bin-contigs-metabat --help in the terminal.

Inputs

• contigs (SampleData[Contigs]): Contigs to be binned.
• alignment-maps (SampleData[AlignmentMap]): Reads-to-contig alignment maps.

Outputs

• mags (SampleData[MAGs]): The resulting MAGs.
• contig-map (FeatureMap[MAGtoContigs]): Mapping of MAG identifiers to the contig identifiers contained in each MAG.
• unbinned-contigs (SampleData[Contigs % Properties('unbinned')]): Contigs that were not binned into any MAG.

Citation

@article{key0,
 author = {Kang, Dongwan D. and Li, Feng and Kirton, Edward and Thomas, Ashleigh and Egan, Rob and An, Hong and Wang, Zhong},
 doi = {10.7717/peerj.7359},
 issn = {21678359},
 journal = {PeerJ},
 keywords = {Clustering,Metagenome binning,Metagenomics},
 number = {7},
 publisher = {PeerJ Inc.},
 title = {MetaBAT 2: An Adaptive Binning Algorithm for Robust and Efficient Genome Reconstruction from Metagenome Assemblies},
 volume = {2019},
 year = {2019}
}