ReferenceDB[NCBITaxonomy]

NCBI reference taxonomy.

Artifact Format

class NCBITaxonomyDirFmt(model.DirectoryFormat):
    node = model.File('nodes.dmp', format=NCBITaxonomyNodesFormat)
    names = model.File('names.dmp', format=NCBITaxonomyNamesFormat)
    tax_map = model.File(
        'prot.accession2taxid.gz',
        format=NCBITaxonomyBinaryFileFmt
    )

Expected Folder Structure

data
├── nodes.dmp
├── names.dmp
└── prot.accession2taxid.gz

Where to find ReferenceDB[NCBITaxonomy]

As Output

• fetch-ncbi-taxonomy

As Input

• build-custom-diamond-db

Relevant Resources

• NCBI FTP server