fetch‐busco‐db

Downloads BUSCO database for the specified lineage. Output can be used to run BUSCO wit the evaluate-busco action.

For the full description of the action's inputs, outputs and parameters run qiime moshpit fetch-busco-db --help in the terminal.

Outputs

• busco-db (ReferenceDB[BuscoDB]): BUSCO database for the specified lineages.

Citation

@article{key0,
 author = {Manni, Mosè and Berkeley, Matthew R and Seppey, Mathieu and Simão, Felipe A and Zdobnov, Evgeny M},
 doi = {10.1093/molbev/msab199},
 editor = {Kelley, Joanna},
 issn = {1537-1719},
 journal = {Molecular Biology and Evolution},
 language = {en},
 month = {September},
 number = {10},
 pages = {4647--4654},
 shorttitle = {BUSCO Update},
 title = {BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes},
 url = {https://academic.oup.com/mbe/article/38/10/4647/6329644},
 urldate = {2023-08-09},
 volume = {38},
 year = {2021}
}