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bokulich-lab / q2-moshpit Public

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GenomeData[Genes]

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Santiago Castro Dau edited this page Apr 16, 2024 · 5 revisions

TODO

Toggle table of contents Pages 73

Home
bin‐contigs‐metabat
BrackenDB
build‐custom‐diamond‐db
build‐eggnog‐diamond‐db
build‐kraken‐db
classify‐kaiju
classify‐kraken2
collate‐annotations
collate‐feature‐data‐mags
collate‐orthologs
collate‐sample‐data‐mags
dereplicate‐mags
DistanceMatrix
EggnogHmmerIdmap
eggnog‐annotate
eggnog‐diamond‐search
eggnog‐hmmer‐search
estimate‐bracken
evaluate‐busco
FeatureData[Kraken2Outputs]
FeatureData[Kraken2Reports]
FeatureData[MAG]
FeatureData[NOG]
FeatureData[ProteinSequence]
FeatureData[Sequence]
FeatureData[Taxonomy]
FeatureTable[Frequency]
FeatureTable[PresenceAbsence]
fetch‐busco‐db
fetch‐diamond‐db
fetch‐eggnog‐db
fetch‐eggnog‐hmmer‐db
fetch‐eggnog‐proteins
fetch‐kaiju‐db
fetch‐ncbi‐taxonomy
Functional Annotation of MAGs (or Contigs)
Generate MAGs from Reads
GenomeData[Genes]
GenomeData[Loci]
GenomeData[Proteins]
Importing and Exporting Data into Qiime2
inspect‐kraken2‐db
KaijuDB
Kraken2DB
Kraken2DBReport
kraken2‐to‐features
kraken2‐to‐mag‐features
MAG Quality Control
partition‐feature‐data‐mags
partition‐orthologs
partition‐sample‐data‐mags
Predict Genes from MAGs
predict‐genes‐prodigal
ProfileHMM[MultipleProtein]
ProfileHMM[PressedProtein]
qiime tools citations
ReferenceDB[BuscoDB]
ReferenceDB[Diamond]
ReferenceDB[Eggnog]
ReferenceDB[EggnogProteinSequences]
ReferenceDB[NCBITaxonomy]
SampleData[BLAST6]
SampleData[Contigs]
SampleData[Kraken2Outputs]
SampleData[Kraken2Reports]
SampleData[MAGs]
SampleData[PairedEndSequencesWithQuality]
SampleData[SequencesWithQuality]
what_to_do
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