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Feature/api #108

Merged
merged 46 commits into from
Oct 3, 2023
Merged

Feature/api #108

merged 46 commits into from
Oct 3, 2023

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victorgiurcoiu
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@victorgiurcoiu victorgiurcoiu commented Aug 8, 2023 •
edited by picciama
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PR Checklist

  • This comment contains a description of changes (with reason)
  • Referenced issue is linked
  • If you've fixed a bug or added code that should be tested, add tests!
  • Documentation in docs is updated

Description of changes

  • added submodules: preprocessing, predict, rescore, plotting
  • added documentation for low level API
  • removed old code and cleaned up repo

Technical details

Additional context

@victorgiurcoiu victorgiurcoiu requested a review from picciama August 8, 2023 13:27
@picciama picciama linked an issue Aug 11, 2023 that may be closed by this pull request
Removal of hierarchical class structure: New API structure #81
Closed
@picciama picciama linked an issue Sep 12, 2023 that may be closed by this pull request
tmtpro flag only adds tag to lysines, not n-term. #123
Closed
@github-actions github-actions bot added the enhancement New feature or request label Sep 23, 2023
@picciama picciama mentioned this pull request Oct 3, 2023
Closed
4 tasks
@github-actions github-actions bot added the chore label Oct 3, 2023
This was linked to issues Oct 3, 2023
Better description on how to install external dependencies #132
Closed
File exists error mzml input #124
Closed
@picciama picciama removed a link to an issue Oct 3, 2023
File exists error mzml input #124
Closed
@picciama picciama linked an issue Oct 3, 2023 that may be closed by this pull request
File exists error mzml input #124
Closed
@picciama picciama merged commit 11ebc3b into development Oct 3, 2023
36 of 37 checks passed
@picciama picciama linked an issue Oct 3, 2023 that may be closed by this pull request
CE calibrating FragPipe results generated from mzML formatted data fails #129
Closed
@picciama picciama deleted the feature/api branch November 1, 2023 08:19
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@picciama picciama picciama approved these changes

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@victorgiurcoiu @picciama