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Pull requests: virtualcell/vcell

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Pull requests list

Fixes bug where logs do not properly get updated in significant size simulations.
#1394 opened Nov 25, 2024 by CodeByDrescher Loading…
Updated KiSAO OBO and added parsing for KiSAO_694
#1393 opened Nov 22, 2024 by CodeByDrescher Loading…
Updating cicd for cli
#1348 opened Sep 6, 2024 by CodeByDrescher Loading…
Fixed a number of issues, all revolving around VCell locking up under the right (wrong) conditions
#1332 opened Jul 26, 2024 by CodeByDrescher Loading…
1
Postgresql migration
#1282 opened Jun 21, 2024 by jcschaff Loading…
@jcschaff
update all vcell-solvers and langevin solver
#1269 opened May 30, 2024 by jcschaff Loading…
@jcschaff
fix K8s CI - wrong path
#1233 opened Apr 30, 2024 by jcschaff Loading…
@jcschaff
Install4J client install as regular user
#1166 opened Feb 29, 2024 by jcschaff Loading…
1
@jcschaff
Bump cryptography from 41.0.4 to 42.0.4 in /docker/swarm/vcell-admin dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1160 opened Feb 21, 2024 by dependabot bot Loading…
Bump pillow from 10.0.1 to 10.2.0 in /pythonCopasiOpt/vcell-opt dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1112 opened Jan 22, 2024 by dependabot bot Loading…
Bump pillow from 10.0.1 to 10.2.0 in /vcell-cli-utils dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1111 opened Jan 22, 2024 by dependabot bot Loading…
Bump pillow from 10.0.0 to 10.2.0 in /pythonVtk dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1110 opened Jan 22, 2024 by dependabot bot Loading…
Bump jinja2 from 3.1.2 to 3.1.3 in /pythonCopasiOpt/vcell-opt dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1104 opened Jan 11, 2024 by dependabot bot Loading…
Bump fonttools from 4.41.1 to 4.43.0 in /pythonVtk dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1100 opened Jan 9, 2024 by dependabot bot Loading…
Bump fonttools from 4.39.3 to 4.43.0 in /vcell-cli-utils dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1099 opened Jan 9, 2024 by dependabot bot Loading…
Bump fonttools from 4.38.0 to 4.43.0 in /pythonCopasiOpt/vcell-opt dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1098 opened Jan 9, 2024 by dependabot bot Loading…
Bump paramiko from 2.11.0 to 3.4.0 in /docker/swarm/vcell-admin dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1086 opened Dec 19, 2023 by dependabot bot Loading…
Recursive dependency linking
#1073 opened Dec 7, 2023 by CodeByDrescher Loading…
@CodeByDrescher
3
Bump jupyter-server from 2.7.2 to 2.11.2 in /pythonCopasiOpt/vcell-opt dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1070 opened Dec 5, 2023 by dependabot bot Loading…
Added appropriate exception catching for SBML errors when exproting to SEDML.
#937 opened Jul 11, 2023 by CodeByDrescher Loading…
840 fix databaseconstraint exceptions VCell-7.5.0 Needed for Release 7.5 VCell-7.5.1
#841 opened Mar 20, 2023 by jcschaff Loading…
1
@jcschaff
Adds BioSimulators Test Suite originating Omex archives for CLI execution tests
#829 opened Mar 7, 2023 by CodeByDrescher Loading…
VCell CLI HDF5 rewrite
#779 opened Feb 7, 2023 by CodeByDrescher Loading…
1
@CodeByDrescher
1
Online Annotations Search Window Type: enhancement enhance existing feature VCell-7.6.0
#752 opened Jan 10, 2023 by abdulmoiz-m Loading…
@abdulmoiz-m
1
WIP: CSG round trip to SBML SBML Standards VCell-7.6.0
#424 opened Sep 28, 2022 by jcschaff • Draft
1
@jcschaff
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