Closes # 459 keeping the documentation of the deprecated functions/arguments up to date

[sadchla-codes]

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[github-actions]

Package	Line Rate	Health
admiraldev	97%	✔
Summary	97% (1044 / 1078)	✔

[StefanThoma]

LGTM!

[bms63]

Many thanks @sadchla-codes. I think the PR you were working on @ProfessorP-beep might not be needed anymore. https://github.com/pharmaverse/admiraldev/pulls