adding sssom support

[glass-ships]

addresses #108
fix #110

Tasks:

• Add SSSOM mapping functionality in Koza writers
• Still need to do something else
• Add testing (still need narrow match and broad match tests, but in another PR)
• Update documentation
• Clarify existing examples (this can/should probably be a separate issue) see Clarify examples #113
• Add example w/ sssom config

[matentzn]

Just lurking feel free to ignore comments

[matentzn]

Where does the config live that says: "use narrow matches for node replacement" vs "us only exact matches for node replacement"?

[glass-ships]

Where does the config live that says: "use narrow matches for node replacement" vs "us only exact matches for node replacement"?

I... don't know if we have one, to be honest

[glass-ships]

Oh, so in response to the config question- I think for now we might just bring this in with only "exact match", and open it up to include narrow in another PR

[matentzn]

Restricting to exact sounds good as a first safe step, but you may loose quite a bit of relevant Information. I think it's worth making that configurable via some property like "merge_on_property".

[glass-ships]

nice one @hrshdhgd thanks for taking a look at that!!

[glass-ships]

is there anything preventing this from being merged as is?

[glass-ships]

There's a lot of formatting noise in this now, but the relevant changes are in:

• model/config/sssom_config.py
• tsv_writer
• jsonl_writer
• example usage in tests/unit/test_sssom_mapping.py