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25 Open 226 Closed
25 Open 226 Closed
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Issues list

transformAssay and altexp
#660 opened Nov 21, 2024 by TuomasBorman
getPrevalent / getPrevalence
#659 opened Nov 20, 2024 by antagomir
getCrossAssociation outputs
#651 opened Oct 17, 2024 by antagomir
1
splitOn error is not clear if using a wrong column name
#647 opened Oct 4, 2024 by artur-sannikov
1
RDA speedup enhancement New feature or request
#633 opened Aug 27, 2024 by antagomir
@TuomasBorman
more functional importers (e.g. humann)
#622 opened Aug 6, 2024 by antagomir
3
Add (optionally) information on butyrate producers to rowData in importing the taxonomic abundances
#621 opened Aug 6, 2024 by antagomir
plotRDA feature loadings
#604 opened Jul 11, 2024 by antagomir
@ElySeraidarian
6
Use vegan in rarefy
#561 opened May 28, 2024 by TuomasBorman
19
R CMD Check contains NOTES
#532 opened Apr 24, 2024 by TuomasBorman
@ake123
3
Faith index
#522 opened Apr 18, 2024 by antagomir
@jepasan
readQZA fails
#491 opened Feb 13, 2024 by antagomir
4
Function naming, logic, aliases
#474 opened Nov 24, 2023 by TuomasBorman
@thpralas
7
transformAssay input
#467 opened Oct 18, 2023 by antagomir
@jepasan
7
Batch transformations.
#429 opened Aug 26, 2023 by antagomir
11
Make create_mofa_from_MultiAssayExperiment() accept alternative experiments
#412 opened Aug 3, 2023 by artur-sannikov
@RiboRings
9
getExperimentCrossAssociation to ignore 0s?
#390 opened Jul 15, 2023 by antagomir
@TuomasBorman
1
MAE helper methods
#388 opened Jul 7, 2023 by antagomir
1
Using decontam with SE object, is there a way to remove contaminant sequences?
#374 opened Jun 21, 2023 by AnnaKaisanLahti
@Daenarys8
2
mergeSEs: improve
#357 opened Apr 4, 2023 by TuomasBorman
2
Porting functional diversity to mia?
#340 opened Feb 7, 2023 by antagomir
1
Bray-Curtis issue
#339 opened Feb 6, 2023 by antagomir
@nuorenarra
5
Taxonomic data format
#331 opened Dec 8, 2022 by antagomir
Support the analysis of matched samples
#196 opened Dec 31, 2021 by antagomir
@TuomasBorman
2
Importer for Biobakery outputs: HUMAnN 3
#190 opened Dec 22, 2021 by antagomir
@TuomasBorman
9
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