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transformAssay and altexp #660

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TuomasBorman opened this issue Nov 21, 2024 · 0 comments
Open

transformAssay and altexp #660

TuomasBorman opened this issue Nov 21, 2024 · 0 comments

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@TuomasBorman
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By default, transformation is applied to alternative experiments. However, if alternative experiment does not have table specified by assay.type, this leads to an error which might be hard to solve.

I suggest that altexp = NULL is the default for SCE method in transformAssay.
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@TuomasBorman