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8.25.0 #740

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merged 50 commits into from
Nov 15, 2024
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6ed03da
WIP fibrephotometry
oliche Jun 20, 2024
c472fa3
WIP photometry copiers / starters
oliche Jun 20, 2024
ccbb381
Start photometry workflow
oliche Jun 24, 2024
e728df5
photometry: start bonsai workflow script
oliche Jun 28, 2024
1360ce6
minimal set of parameters to start a photometry session
oliche Sep 17, 2024
32c9ecc
add the default bonsai path relative to home
oliche Sep 17, 2024
5f98134
debug arguement
oliche Sep 17, 2024
a309c94
bonsai executable
oliche Sep 17, 2024
63f1cb9
add documentation
oliche Sep 17, 2024
e577630
WIP copier photometry
oliche Oct 11, 2024
bcc789d
save changes to the bonsai workflow
Oct 11, 2024
732116c
add argument parser
bimac Oct 11, 2024
d49a24b
Merge branch 'photometry' of github.com:int-brain-lab/iblrig into pho…
bimac Oct 11, 2024
7e1eaf1
start_photometry_task_cmd
oliche Oct 11, 2024
cc037ef
add methods for converting bpod data into a dataframe
bimac Oct 25, 2024
aa4a827
add methods for converting state timing to dataframe
bimac Oct 27, 2024
b4bc6ab
combine methods for getting trials data and event data as dataframes
bimac Oct 27, 2024
34e8fda
WIP fibrephotometry
oliche Jun 20, 2024
259e380
WIP photometry copiers / starters
oliche Jun 20, 2024
ac18ce8
Start photometry workflow
oliche Jun 24, 2024
6ca90f2
photometry: start bonsai workflow script
oliche Jun 28, 2024
abd161b
minimal set of parameters to start a photometry session
oliche Sep 17, 2024
0e9120f
add the default bonsai path relative to home
oliche Sep 17, 2024
e3d02b8
debug arguement
oliche Sep 17, 2024
649a192
bonsai executable
oliche Sep 17, 2024
545152e
add documentation
oliche Sep 17, 2024
14a2205
WIP copier photometry
oliche Oct 11, 2024
3c2b4f5
add argument parser
bimac Oct 11, 2024
5a5d939
save changes to the bonsai workflow
Oct 11, 2024
fdcf2f6
start_photometry_task_cmd
oliche Oct 11, 2024
9fc2755
wip photometry UCL extraction
oliche Nov 8, 2024
cff3a9e
neurophotometrics copier init/copy collections
oliche Nov 10, 2024
4746be5
completed copy for UCL neurophotometrics
oliche Nov 11, 2024
aa44044
Merge branch 'iblrigv8' into photometry
bimac Nov 11, 2024
ff9366e
Merge branch 'photometry' of github.com:int-brain-lab/iblrig into pho…
bimac Nov 11, 2024
db9cd24
Update test_neurophotometrics.py
bimac Nov 11, 2024
347c705
make sure the description starts with device name
oliche Nov 11, 2024
6da07ff
update dependencies / add pandera
bimac Nov 12, 2024
3c43c88
fix tests
oliche Nov 12, 2024
e05594e
pin to numpy < 2.0
bimac Nov 12, 2024
7938783
Replace tkinter dialogs with CLI input prompt
bimac Nov 12, 2024
55e3dc6
one.alf.files -> one.alf.path
k1o0 Nov 1, 2024
5b0f763
Merge pull request #735 from int-brain-lab/alfFilesDeprecation
k1o0 Nov 13, 2024
0095512
use TimedeltaIndex and drop 'Time' column
bimac Nov 13, 2024
686361e
propagate state-names using ffill
bimac Nov 13, 2024
3d8eaa5
Merge branch 'iblrigv8dev' into photometry
bimac Nov 15, 2024
79d9084
Merge pull request #737 from int-brain-lab/photometry
bimac Nov 15, 2024
5c1e6eb
Merge branch 'online-plots' into iblrigv8dev
bimac Nov 15, 2024
1b7c889
Merge branch 'online-plots' into iblrigv8dev
bimac Nov 15, 2024
5ad937d
prepare release
bimac Nov 15, 2024
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Update test_neurophotometrics.py
bimac committed Nov 11, 2024
commit db9cd249d15a35ad486eb4ff8982af618b71c56c
1 change: 0 additions & 1 deletion iblrig/test/test_neurophotometrics.py
Original file line number Diff line number Diff line change
@@ -1,7 +1,6 @@
import datetime
import unittest


from iblrig.transfer_experiments import NeurophotometricsCopier