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8.25.0 #740

Merged
merged 50 commits into from
Nov 15, 2024
Merged

8.25.0 #740

merged 50 commits into from
Nov 15, 2024

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bimac
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@bimac bimac commented Nov 15, 2024

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oliche and others added 30 commits October 11, 2024 16:42
@oliche
WIP fibrephotometry
6ed03da
@oliche
WIP photometry copiers / starters
c472fa3
@oliche
Start photometry workflow
ccbb381
@oliche
photometry: start bonsai workflow script
e728df5
@oliche
minimal set of parameters to start a photometry session
1360ce6
@oliche
add the default bonsai path relative to home
32c9ecc
@oliche
debug arguement
5f98134
@oliche
bonsai executable
a309c94
@oliche
add documentation
63f1cb9
@oliche
WIP copier photometry
e577630
@oliche
save changes to the bonsai workflow
bcc789d
@bimac
add argument parser
732116c
@bimac
Merge branch 'photometry' of github.com:int-brain-lab/iblrig into pho…
d49a24b 
…tometry
@oliche
start_photometry_task_cmd
7e1eaf1
@bimac
add methods for converting bpod data into a dataframe
cc037ef
@bimac
add methods for converting state timing to dataframe
aa4a827
@bimac
combine methods for getting trials data and event data as dataframes
b4bc6ab
@oliche
WIP fibrephotometry
34e8fda
@oliche
WIP photometry copiers / starters
259e380
@oliche
Start photometry workflow
ac18ce8
@oliche
photometry: start bonsai workflow script
6ca90f2
@oliche
minimal set of parameters to start a photometry session
abd161b
@oliche
add the default bonsai path relative to home
0e9120f
@oliche
debug arguement
e3d02b8
@oliche
bonsai executable
649a192
@oliche
add documentation
545152e
@oliche
WIP copier photometry
14a2205
@bimac @oliche
add argument parser
3c2b4f5
@oliche
save changes to the bonsai workflow
5a5d939
@oliche
start_photometry_task_cmd
fdcf2f6
oliche and others added 19 commits November 8, 2024 19:23
@oliche
wip photometry UCL extraction
9fc2755
@oliche
neurophotometrics copier init/copy collections
cff3a9e
@oliche
completed copy for UCL neurophotometrics
4746be5
@bimac
Merge branch 'iblrigv8' into photometry
aa44044
@bimac
Merge branch 'photometry' of github.com:int-brain-lab/iblrig into pho…
ff9366e 
…tometry
@bimac
Update test_neurophotometrics.py
db9cd24
@oliche
make sure the description starts with device name
347c705
@bimac
update dependencies / add pandera
6da07ff
@oliche
fix tests
3c43c88
@bimac
pin to numpy < 2.0
e05594e
@bimac
Replace tkinter dialogs with CLI input prompt
7938783
@k1o0
one.alf.files -> one.alf.path
55e3dc6
@k1o0
Merge pull request #735 from int-brain-lab/alfFilesDeprecation
5b0f763 
one.alf.files -> one.alf.path
@bimac
use TimedeltaIndex and drop 'Time' column
0095512
@bimac
propagate state-names using ffill
686361e
@bimac
Merge branch 'iblrigv8dev' into photometry
3d8eaa5
@bimac
Merge pull request #737 from int-brain-lab/photometry
79d9084 
Photometry copier
@bimac
Merge branch 'online-plots' into iblrigv8dev
5c1e6eb
@bimac
Merge branch 'online-plots' into iblrigv8dev
1b7c889
@coveralls
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coveralls commented Nov 15, 2024 •
edited
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Coverage Status

coverage: 47.632% (-0.3%) from 47.918%
when pulling 5ad937d on iblrigv8dev
into 6671d7b on iblrigv8.

@bimac bimac merged commit 51f0ef2 into iblrigv8 Nov 15, 2024
3 checks passed
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4 participants
@bimac @coveralls @oliche @k1o0