Code

8.25.0#740

Code

Merged

bimac merged 50 commits intoiblrigv8int-brain-lab/iblrig:iblrigv8from iblrigv8devint-brain-lab/iblrig:iblrigv8devCopy head branch name to clipboardNov 15, 2024

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Commits

Commits on Oct 11, 2024

• WIP fibrephotometry

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• WIP photometry copiers / starters

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• Start photometry workflow

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• photometry: start bonsai workflow script

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• minimal set of parameters to start a photometry session

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• add the default bonsai path relative to home

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• debug arguement

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• bonsai executable

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• add documentation

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• WIP copier photometry

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• save changes to the bonsai workflow

  

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• add argument parser

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• Merge branch 'photometry' of github.com:int-brain-lab/iblrig into photometry

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• start_photometry_task_cmd

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Commits on Oct 25, 2024

• add methods for converting bpod data into a dataframe

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Commits on Oct 27, 2024

• add methods for converting state timing to dataframe

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• combine methods for getting trials data and event data as dataframes

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Commits on Nov 7, 2024

• WIP fibrephotometry

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• WIP photometry copiers / starters

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• Start photometry workflow

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• photometry: start bonsai workflow script

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• minimal set of parameters to start a photometry session

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• add the default bonsai path relative to home

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• debug arguement

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• bonsai executable

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• add documentation

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• WIP copier photometry

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• add argument parser

  

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• save changes to the bonsai workflow

  

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• start_photometry_task_cmd

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Commits on Nov 8, 2024

• wip photometry UCL extraction

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Commits on Nov 10, 2024

• neurophotometrics copier init/copy collections

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Commits on Nov 11, 2024

• completed copy for UCL neurophotometrics

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• Merge branch 'iblrigv8' into photometry

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• Merge branch 'photometry' of github.com:int-brain-lab/iblrig into photometry

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• Update test_neurophotometrics.py

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• make sure the description starts with device name

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Commits on Nov 12, 2024

• update dependencies / add pandera

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• fix tests

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• pin to numpy < 2.0

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• Replace tkinter dialogs with CLI input prompt

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Commits on Nov 13, 2024

• one.alf.files -> one.alf.path

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• Merge pull request #735 from int-brain-lab/alfFilesDeprecation

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• use TimedeltaIndex and drop 'Time' column

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• propagate state-names using ffill

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Commits on Nov 15, 2024

• Merge branch 'iblrigv8dev' into photometry

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• Merge pull request #737 from int-brain-lab/photometry

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• Merge branch 'online-plots' into iblrigv8dev

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• Merge branch 'online-plots' into iblrigv8dev

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• prepare release

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