Predict Genes from MAGs

Once you have a Qiime artifact containing your MAGs (e.g. mags.qza) you can use the predict-genes-prodigal action from q2-moshpit to predict genes from your MAGs.

You can find out more about how to generate a mags.qza artifact in the Generate MAGs from reads tutorial

Estimated runtime: 2 minutes

qiime moshpit predict-genes-prodigal \
  --i-mags mags.qza \
  --o-loci loci.qza \
  --o-proteins proteins.qza \
  --o-genes genes.qza \
  --verbose