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Pull requests: bigdatagenomics/avocado

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Pull requests list

[AVOCADO] Update ADAM dependency to 0.26.0.

#307 opened Nov 13, 2018 by heuermh

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Per position allele count reporting utility ( like bam-readcount)

#297 opened Feb 20, 2018 by jpdna

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[AVOCADO-295] Set correct index when checking quality score during variant discovery.

#296 opened Feb 19, 2018 by fnothaft

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0.2.0

[AVOCADO-274] Add flag to emit all genotyped variants, regardless of quality.

#275 opened Oct 24, 2017 by fnothaft

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Pass assembly variants to realigner as knowns

#208 opened Feb 28, 2017 by fnothaft

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Work on getting Mutect algorithm up and running

#167 opened May 18, 2015 by jstjohn

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