Skip to content

Issues: bigdatagenomics/avocado

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

19 Open 117 Closed
19 Open 117 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Update ADAM dependency to 0.26.0
#306 opened Nov 13, 2018 by heuermh
Unable to locate file from biallelicGenotyper in jointer
#305 opened Oct 8, 2018 by ggittu
Read group dictionary contains multiple samples with identical read group names.
#303 opened Jul 1, 2018 by shukwong
distribution does not include the avocado jar files
#290 opened Jan 18, 2018 by pbashyal-nmdp 0.2.0
Write original genotype prior to joint genotyping enhancement
#286 opened Jan 8, 2018 by fnothaft
1 task
Calling with Avocado using the "hive" range partitioned data
#283 opened Jan 6, 2018 by jpdna
Variant Calling+Variant Filtering+ Variant Annotation
#279 opened Oct 26, 2017 by Rokshan2016
Output/Single Parquet File/
#277 opened Oct 25, 2017 by Rokshan2016
Support banded reference model enhancement
#276 opened Oct 25, 2017 by fnothaft
@fnothaft
BiallelicGenotyper needs to be able to skip filtration bug enhancement
#274 opened Oct 24, 2017 by fnothaft
@fnothaft
Benchmark against Precision FDA or other "truth-sets"
#271 opened Oct 16, 2017 by jpdna
1
Spark Version
#261 opened Sep 28, 2017 by Rokshan2016
1
BUILD FAILURE
#251 opened Jul 6, 2017 by shibuvp
28
DiscoverVariants runtime has big difference between repeated run with the same args.
#231 opened Apr 15, 2017 by xubo245
4
Args4j version discrepency
#225 opened Apr 3, 2017 by devin-petersohn
Add test coverage for CLI enhancement
#216 opened Feb 28, 2017 by fnothaft
@fnothaft
Add trim-through in assembly code enhancement
#201 opened Jan 17, 2017 by fnothaft
@fnothaft
Realignment using assembly to pick variants
#200 opened Jan 17, 2017 by fnothaft
@fnothaft
Add an implementation of Mutect
#114 opened Oct 15, 2014 by tdanford
@tdanford
10
ProTip! Add no:assignee to see everything that’s not assigned.