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[AVOCADO-295] Set correct index when checking quality score during variant discovery. #296

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Resolves #295. @jpdna I'll test this and let you know if this winds up being much of an accuracy change. Thanks for catching this! Also, this needs some more tests to catch the bad behavior.

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coveralls commented Feb 19, 2018

Coverage Status

Coverage remained the same at 79.929% when pulling c0ab9ff on fnothaft:issues/295-fix-qual-index into e0979dd on bigdatagenomics:master.

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Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/avocado-prb/231/
Test PASSed.

@fnothaft fnothaft added this to the 0.2.0 milestone Jun 9, 2018
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