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32 Open 9 Closed
32 Open 9 Closed
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Issues list

Allow independent fitting of mu_phi and s_phi parameters
#400 opened Apr 25, 2024 by mikegilchrist
CHange plotting behavior of LLik and Log PPr to avoid zoom window
#399 opened Apr 25, 2024 by mikegilchrist
Add priors for all parameters and make defining these priors more flexible enhancement
#394 opened Aug 14, 2023 by acope3
@acope3
2
Testing Failure when Running ROC's MCMC Object
#393 opened Aug 1, 2023 by mikegilchrist
saving and loading MCMC object results in loss of first element
#388 opened Aug 15, 2022 by mikegilchrist
@acope3
1
Create tests for saving and loading model and parameter objects
#387 opened Aug 11, 2022 by mikegilchrist
Improved vignette enhancement
#386 opened Jun 23, 2022 by acope3
@acope3
Error in loadParameterObject for CRAN version bug
#385 opened Jun 23, 2022 by acope3
@acope3
1
Add stop codons to analysis enhancement
#384 opened Jun 14, 2022 by mikegilchrist
Output expected waiting times for PA and PANSE
#381 opened Apr 22, 2022 by acope3
Add functions for calculating DIC for ROC enhancement
#380 opened Feb 10, 2022 by acope3
@acope3
Error when loading first parameter object in a session
#377 opened Nov 22, 2021 by mikegilchrist
1
Diverging from initial conditions with PA/PANSE causes values to start at NA bug
#373 opened Nov 5, 2021 by acope3
@acope3
Deprecate split.serine for initializeParameterObject
#372 opened Nov 5, 2021 by acope3
@acope3
Move diag calculations within convergence test
#365 opened Jul 21, 2021 by mikegilchrist
1
Proposed Change: Adopt Better Adaptive Beahvior for MCMC
#364 opened Jul 7, 2021 by mikegilchrist
std_csp still needed for ROC/FONSE
#363 opened Jun 25, 2021 by acope3
@acope3
Bug in AAToCodon?
#362 opened Jun 21, 2021 by mikegilchrist
2
Update documentation to reflect that CodonTable.cpp is not currently used in production code enhancement
#361 opened Mar 5, 2021 by acope3
@acope3
Update autocorrelation plots enhancement
#360 opened Mar 5, 2021 by acope3
@acope3
Don't update std_csp when elongation parameters are fixed bug
#359 opened Feb 26, 2021 by acope3
@acope3
Acceptance Rates of 1 when parameters fixed bug
#358 opened Feb 26, 2021 by acope3
@acope3
Improve terminology in code and output related to 'step', 'sample' and 'iteration'
#353 opened Jul 17, 2020 by mikegilchrist
Change Behavior: Should return NA when length not a multiple of 3
#352 opened Jul 14, 2020 by mikegilchrist
1
Complex Question: Updating GroupList of AA's analyzed in ROC and or elsewhere
#349 opened Mar 12, 2020 by mikegilchrist
1
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