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Università degli Studi di Milano
- Milano, Italy
- http://www.cattaneolab.it/?lang=en
- https://orcid.org/0000-0002-1192-0684
- @SimoneMaestri8
- in/simone-maestri-0b6789112
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ONTrack2 Public
A Nextflow MinION-based pipeline for tracking species biodiversity
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UMInator Public
A Nextflow pipeline for generating consensus sequences from Nanopore reads tagged with UMIs
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MetONTIIME Public
A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework
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QIIME2_Illumina Public
A Meta-barcoding pipeline for analysing Illumina data in QIIME2 framework
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CharONT Public archive
An ONT-based pipeline for characterizing long genomic regions
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ONTrack Public archive
A MinION-based pipeline for tracking species biodiversity
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MetaBlast Public
A Metagenomic pipeline for parallel Blast analysis and report generation.
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MosaicViewer_HTT Public
A pipeline for schematic IGV visualization of HTT alleles with somatic mosaicism
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CharONT2 Public
A NextFlow ONT-based pipeline for characterizing long genomic regions
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MosaicViewer_FMR1 Public
A pipeline for schematic IGV visualization of FMR1 alleles with somatic mosaicism
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MosaicViewer_CNBP Public
A pipeline for schematic IGV visualization of expanded CNBP alleles with somatic mosaicism
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nf-m6anet Public
A NextFlow pipeline for m6A detection from Nanopore direct RNA-seq data
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ONT_preprocessing Public archive
A preprocessing pipeline for ONT data
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nf-eligos Public
A NextFlow pipeline for modifications detection from Nanopore direct RNA-seq data
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nf-msspe Public
A NextFlow pipeline for Metagenomic Sequencing with Spiked Primer Enrichment
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MetaKraken2 Public
A Metagenomic pipeline for Kraken2 analysis and Krona report generation.
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Illumina_variant_calling Public
A quality check, alignment and small variant calling pipeline for Illumina paired-end reads
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Covid19_ONT_Artic Public
A set of scripts for running the ARTIC pipeline from fast5 ONT data to filtered SARS-CoV-2 variants and coverage plots
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pycoMethFlow Public
A nextflow pipeline for running pycoMeth
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Bionano_fixdups Public
A script for removing artificial duplications introduced by Bionano solve scaffolding pipeline
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ONToHap Public
An ONT-based pipeline for haplotype phasing
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entrez_qiime Public
Forked from bakerccm/entrez_qiimeA utility to generate input files for taxonomy assignment in QIIME from the NCBI database
Python GNU General Public License v3.0 UpdatedApr 24, 2020