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Gaius-Augustus

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  1. BRAKER BRAKER Public

    BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

    Perl 374 83

  2. Augustus Augustus Public

    Genome annotation with AUGUSTUS

    C++ 292 111

  3. GALBA GALBA Public

    GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several close…

    Perl 139 4

  4. TSEBRA TSEBRA Public

    Forked from LarsGab/TSEBRA

    TSEBRA: Transcript Selector for BRAKER

    Python 47 5

  5. Tiberius Tiberius Public

    Tiberius is a deep learning gene finder.

    Python 45 3

  6. MakeHub MakeHub Public

    Fully automated generation of UCSC assembly hubs

    Python 34 4

Repositories

Showing 10 of 19 repositories
  • GALBA Public

    GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.

    Gaius-Augustus/GALBA’s past year of commit activity
    Perl 139 4 10 1 Updated Jan 22, 2025
  • BRAKER Public

    BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

    Gaius-Augustus/BRAKER’s past year of commit activity
    Perl 374 83 158 (3 issues need help) 1 Updated Jan 22, 2025
  • Tiberius Public

    Tiberius is a deep learning gene finder.

    Gaius-Augustus/Tiberius’s past year of commit activity
    Python 45 MIT 3 9 0 Updated Jan 22, 2025
  • learnMSA Public

    Learning and Aligning Large Protein Families with support of protein language models.

    Gaius-Augustus/learnMSA’s past year of commit activity
    Jupyter Notebook 20 MIT 4 4 0 Updated Jan 9, 2025
  • Augustus Public

    Genome annotation with AUGUSTUS

    Gaius-Augustus/Augustus’s past year of commit activity
    C++ 292 111 157 5 Updated Jan 6, 2025
  • webaugustus Public
    Gaius-Augustus/webaugustus’s past year of commit activity
    Groovy 0 0 0 0 Updated Dec 8, 2024
  • clamsa Public Forked from liemonade/clamsa

    ClaMSA (Classify Multiple Sequence Alignments).

    Gaius-Augustus/clamsa’s past year of commit activity
    Python 11 2 4 (1 issue needs help) 0 Updated Nov 21, 2024
  • TSEBRA Public Forked from LarsGab/TSEBRA

    TSEBRA: Transcript Selector for BRAKER

    Gaius-Augustus/TSEBRA’s past year of commit activity
    Python 47 7 12 0 Updated Nov 13, 2024
  • MakeHub Public

    Fully automated generation of UCSC assembly hubs

    Gaius-Augustus/MakeHub’s past year of commit activity
    Python 34 GPL-3.0 4 1 0 Updated Oct 2, 2024
  • Diatom_annotation_scripts Public

    Helper scripts to prepare a functionally decorated BRAKER output file for upload to NCBI Genomes

    Gaius-Augustus/Diatom_annotation_scripts’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 16, 2024
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