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Issues: Gaius-Augustus/BRAKER

ERROR No query file specified
#446 opened Dec 2, 2021 by jonnyPizza
Open 9
BRAKER on Conda Cloud
#22 opened Feb 15, 2019 by LironShv
Open 32
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158 Open 674 Closed
158 Open 674 Closed
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Issues list

Did BRAKER3 predict genes in hardmasked regions?
#906 opened Jan 11, 2025 by majnusova
serious BUG: $err_stopCodonExcludedFromCDS
#905 opened Jan 7, 2025 by liuyaming1
Internal stop codons were found in a protein-coding gene
#904 opened Dec 27, 2024 by xo2003
Adjust the weighting of RNA-seq evidence and re-run by TSEBRA
#903 opened Dec 24, 2024 by hungweichen0327
Some suggestions required after checking braker3 gff file
#902 opened Dec 24, 2024 by Abieskawa
error in genemark
#900 opened Dec 17, 2024 by qfh20m20m
2
Error when running test1.sh
#899 opened Dec 15, 2024 by KatherineNH
1
Error while running MakeHub
#898 opened Dec 14, 2024 by ASUQ
Using conda to install BRAKER3
#897 opened Dec 13, 2024 by jiangxiuhan0310
4
gene interval is short than CDS interval
#896 opened Dec 13, 2024 by leon945945
3
Properties::getProperty(): cannot convert value "#" of key "/Constant/opalprob" into double.
#895 opened Dec 4, 2024 by Z-rose7
Few genes annotated with RNASeq BRAKER3
#894 opened Nov 29, 2024 by bijendrabio
error :get_gc_content.py
#893 opened Nov 29, 2024 by cpouchon
1
How to apply the species models to another species
#891 opened Nov 28, 2024 by Eden-yike
3
(GeneMark-ET) Error in 'make_nt_freq_mat.pl'
#890 opened Nov 27, 2024 by shin0727
3
can't find compleasm_to_hints.py
#889 opened Nov 25, 2024 by SolayMane
1
Issue occurred when ProtHint running in the iterative mode
#887 opened Nov 24, 2024 by tianchuw-TinaWu
1
Does anyone try to apply InGenAnnot adding UTR function after Braker annotation
#886 opened Nov 24, 2024 by Abieskawa
Suggestions of input datasets I used for braker2/3
#885 opened Nov 19, 2024 by hungweichen0327
2
503: SyntaxWarning: invalid escape sequence '\.'
#884 opened Nov 14, 2024 by Georicl
3
best_by_compleasm.py ERROR (GeneMark trancript too long)
#882 opened Nov 6, 2024 by jolbi
15
Error while running BRAKER3
#880 opened Oct 30, 2024 by InesGaLu
8
Questions regarding tsebra
#879 opened Oct 24, 2024 by bauerlev
1
GeneMark error on the names in the genome file
#877 opened Oct 17, 2024 by pelotbdr
--busco_lineage helps with busco scores but not with protein number
#876 opened Oct 16, 2024 by aureliendejode
4
ProTip! Updated in the last three days: updated:>2025-01-20.