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channel order
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uniqueg committed Sep 11, 2023
1 parent 58fafee commit 8ddb254
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Showing 2 changed files with 23 additions and 25 deletions.
29 changes: 14 additions & 15 deletions environment-dev.yml
Original file line number Diff line number Diff line change
@@ -1,25 +1,24 @@
name: htsinfer
channels:
- defaults
- conda-forge
- bioconda
dependencies:
- biopython>=1.78
- coverage>=5.3
- cutadapt>=3.5, <=4.2
- flake8>=3.8.4
- kallisto>=0.46.1, <= 0.48.0
- mypy>=0.782
- biopython >=1.78
- coverage >=5.3
- cutadapt >=3.5, <=4.2
- flake8 >=3.8.4
- kallisto >=0.46.1, <= 0.48.0
- mypy >=0.782
- numpy >=1.22, <1.25
- pandas >=1.3.5, <1.4.0
- pip>=20.2.3
- pyahocorasick>=1.4.0
- pydantic>=1.8.1, <2
- pylint>=2.4.4
- pysam>=0.16.0
- pytest>=6.1.0
- python>=3.8, <=3.10
- star>=2.7.6
- pip >=20.2.3
- pyahocorasick >=1.4.0
- pydantic >=1.8.1, <2
- pylint >=2.4.4
- pysam >=0.16.0
- pytest >=6.1.0
- python >=3.8, <=3.10
- star >=2.7.6
- pip:
- python-semantic-release>=7.15.0
- -e .
19 changes: 9 additions & 10 deletions environment.yml
Original file line number Diff line number Diff line change
@@ -1,19 +1,18 @@
name: htsinfer
channels:
- defaults
- conda-forge
- bioconda
dependencies:
- biopython>=1.78
- kallisto>=0.46.1, <= 0.48.0
- biopython >=1.78
- cutadapt >=3.5, <=4.2
- kallisto >=0.46.1, <= 0.48.0
- numpy >=1.22, <1.25
- pandas >=1.3.5, <1.4.0
- pip>=20.2.3
- pyahocorasick>=1.4.0
- pydantic>=1.8.1, <2
- pysam>=0.16.0
- python>=3.8, <=3.10
- star>=2.7.6
- cutadapt>=3.5, <=4.2
- pip >=20.2.3
- pyahocorasick >=1.4.0
- pydantic >=1.8.1, <2
- pysam >=0.16.0
- python >=3.8, <=3.10
- star >=2.7.6
- pip:
- -e .

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