drop support for python 3.7

zavolanlab · Sep 11, 2023 · 58fafee · 58fafee
1 parent cfa8f0a
commit 58fafee
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Showing 5 changed files with 32 additions and 7 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -47,7 +47,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: [ '3.7', '3.8', '3.9' ]
+        python-version: [ '3.8', '3.9', '3.10' ]
 
     name: unit-testing-Python-${{ matrix.python-version }}
 
@@ -93,7 +93,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: [ '3.7', '3.8', '3.9' ]
+        python-version: [ '3.8', '3.9', '3.10' ]
 
     name: integration-testing-Python-${{ matrix.python-version }}
 

diff --git a/] b/]
@@ -0,0 +1,25 @@
+name: htsinfer
+channels:
+  - defaults
+  - conda-forge
+  - bioconda
+dependencies:
+  - biopython>=1.78
+  - coverage>=5.3
+  - cutadapt>=3.5, <=4.2
+  - flake8>=3.8.4
+  - kallisto>=0.46.1, <= 0.48.0
+  - mypy>=0.782
+  - numpy >=1.22, <1.25
+  - pandas >=1.3.5, <1.4.0
+  - pip>=20.2.3
+  - pyahocorasick>=1.4.0
+  - pydantic>=1.8.1, <2
+  - pylint>=2.4.4
+  - pysam>=0.16.0
+  - pytest>=6.1.0
+  - python>=3.8, <=3.10
+  - star>=2.7.6
+  - pip:
+    - python-semantic-release>=7.15.0
+    - -e .
diff --git a/environment-dev.yml b/environment-dev.yml
@@ -18,7 +18,7 @@ dependencies:
   - pylint>=2.4.4
   - pysam>=0.16.0
   - pytest>=6.1.0
-  - python>3.6, <3.10
+  - python>=3.8, <=3.10
   - star>=2.7.6
   - pip:
     - python-semantic-release>=7.15.0

diff --git a/environment.yml b/environment.yml
@@ -1,8 +1,8 @@
 name: htsinfer
 channels:
-  - bioconda
-  - conda-forge
   - defaults
+  - conda-forge
+  - bioconda
 dependencies:
   - biopython>=1.78
   - kallisto>=0.46.1, <= 0.48.0
@@ -12,7 +12,7 @@ dependencies:
   - pyahocorasick>=1.4.0
   - pydantic>=1.8.1, <2
   - pysam>=0.16.0
-  - python>3.6, <3.10
+  - python>=3.8, <=3.10
   - star>=2.7.6
   - cutadapt>=3.5, <=4.2
   - pip:

diff --git a/setup.py b/setup.py
@@ -26,9 +26,9 @@
         "Intended Audience :: Science/Research",
         "License :: OSI Approved :: Apache Software License",
         "Natural Language :: English",
-        "Programming Language :: Python :: 3.7",
         "Programming Language :: Python :: 3.8",
         "Programming Language :: Python :: 3.9",
+        "Programming Language :: Python :: 3.10",
         "Topic :: Scientific/Engineering :: Bio-Informatics",
         "Topic :: Utilities",
     ],