Update README.md

README.md

@@ -1,17 +1,17 @@
-#Bhast
+# Bhast
 Ben's HLA Allele Submission Tool
 A tool for generating an EMBL-formatted submission of a standard novel HLA allele. 
 
-##Download the executable
+## Download the executable
 When the compiled executable is available, i'll put a link for the file download here.
 
-##Run using Python
+## Run using Python
 Run this program using standard python call:  
 ```
 python AlleleSubmissionEMBL.py
 ```
 
-##To configure Anaconda
+## To configure Anaconda
 Anaconda uses separate environments to run your programs in.  
 Install Anaconda for python 2.7.  
 https://www.continuum.io/downloads  
@@ -30,7 +30,7 @@ conda create --name AlleleSubEnvironment biopython six pywin32
 call activate AlleleSubEnvironment && pip install pyinstaller packaging && call deactivate  
 ```
 
-##Run using a bash or .bat script using anaconda
+## Run using a bash or .bat script using anaconda
 You can execute the following scripts to run the tool inside of Anaconda:  
 Linux/Mac:  
 ```
@@ -41,7 +41,7 @@ Windows:
 Run_allele_submission.bat
 ```
 
-##Input Data
+## Input Data
 Input data sequence must consist of  
 1) 5' UTR  
 2) Any number of Exons, with an introns distributed between them.  
@@ -65,10 +65,10 @@ tagctagct
 AGCTAGCTA  
 gctagctagctag  
 
-##Output Data
+## Output Data
 The resulting report is in the form of an EMBL HLA Novel Allele submission flatfile.  You can submit this to EMBL as a new HLA allele.
 
-##For more information on EMBL's ENA format:  
+## For more information on EMBL's ENA format:  
 http://www.ebi.ac.uk/ena/submit/sequence-submission  
 http://www.ebi.ac.uk/ena/submit/entry-upload-templates  
 ftp://ftp.ebi.ac.uk/pub/databases/embl/doc/usrman.txt