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@transplantation-immunology-maastricht

MUMC Transplantation Immunology

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  1. saddle-bags saddle-bags Public

    Tool for generating EMBL-format HLA allele submissions

    Python 3 2

  2. allele-wrangler allele-wrangler Public archive

    For Wrangling HLA Alleles

    Python 1 1

  3. nanopore-prospector nanopore-prospector Public

    GUI Interface for analysis of MinION nanopore reads of HLA amplicon sequences

    Python 1 1

  4. General-information General-information Public

    This contains documentation and procedures

  5. AlternativeSplicingAnalysis AlternativeSplicingAnalysis Public

    Analysis and Quantification of Alternatively Spliced MinION cDNA Reads using GMAP

    1

  6. punkin-chunker punkin-chunker Public archive

    A tool for sorting and clustering reads by HLA locus or allele group

    Python 1

Repositories

Showing 10 of 11 repositories
  • abo-analysis Public

    Analysis of ABO MinION sequences

    transplantation-immunology-maastricht/abo-analysis’s past year of commit activity
    Python 0 GPL-3.0 3 1 1 Updated Aug 15, 2024
  • read-filter Public

    Filtering Fastq minion reads as a step in the analysis pipeline.

    transplantation-immunology-maastricht/read-filter’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Feb 1, 2021
  • saddle-bags Public

    Tool for generating EMBL-format HLA allele submissions

    transplantation-immunology-maastricht/saddle-bags’s past year of commit activity
    Python 3 2 0 0 Updated Feb 14, 2020
  • gendx-xml-parser Public

    A parser for Gendx formatted XML files. Attempts to create a consensus sequence.

    transplantation-immunology-maastricht/gendx-xml-parser’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jan 27, 2020
  • order-number-converter Public

    Swisslab requires order numbers in a different format, this is a simple utility for finding and replacing some order numbers.

    transplantation-immunology-maastricht/order-number-converter’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jan 27, 2020
  • nanopore-prospector Public

    GUI Interface for analysis of MinION nanopore reads of HLA amplicon sequences

    transplantation-immunology-maastricht/nanopore-prospector’s past year of commit activity
    Python 1 GPL-3.0 1 1 0 Updated Oct 10, 2019
  • allele-wrangler Public archive

    For Wrangling HLA Alleles

    transplantation-immunology-maastricht/allele-wrangler’s past year of commit activity
    Python 1 GPL-3.0 1 0 0 Updated Sep 22, 2017
  • punkin-chunker Public archive

    A tool for sorting and clustering reads by HLA locus or allele group

    transplantation-immunology-maastricht/punkin-chunker’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Sep 22, 2017
  • nit-picker Public archive

    A tool for preparing fastq reads from MinION. Combine reads, Generate read quality stats, and possibly demultiplex

    transplantation-immunology-maastricht/nit-picker’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Jun 13, 2017
  • AlternativeSplicingAnalysis Public

    Analysis and Quantification of Alternatively Spliced MinION cDNA Reads using GMAP

    transplantation-immunology-maastricht/AlternativeSplicingAnalysis’s past year of commit activity
    0 1 0 0 Updated Apr 21, 2017
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