Merge pull request #7 from bmatern/master

Version 1.1, EMBL REST Submissions Added
transplantation-immunology-maastricht · Jul 6, 2017 · 9c447df · 9c447df
2 parents 80d326a + 852eb56
commit 9c447df
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diff --git a/HEADER b/HEADER
@@ -1,16 +1,15 @@
-# This file is part of EMBL-HLA-Submission.
+# This file is part of saddle-bags.
 #
-# EMBL-HLA-Submission is free software: you can redistribute it and/or modify
+# saddle-bags is free software: you can redistribute it and/or modify
 # it under the terms of the GNU Lesser General Public License as published by
 # the Free Software Foundation, either version 3 of the License, or
 # (at your option) any later version.
 #
-# EMBL-HLA-Submission is distributed in the hope that it will be useful,
+# saddle-bags is distributed in the hope that it will be useful,
 # but WITHOUT ANY WARRANTY; without even the implied warranty of
 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 # GNU Lesser General Public License for more details.
 #
 # You should have received a copy of the GNU Lesser General Public License
-# along with EMBL-HLA-Submission. If not, see <http://www.gnu.org/licenses/>.
+# along with saddle-bags. If not, see <http://www.gnu.org/licenses/>.
 
-# Version 1.0
diff --git a/MakeExecutables.bat b/MakeExecutables.bat
@@ -1,17 +1,17 @@
-:: This file is part of EMBL-HLA-Submission.
+:: This file is part of saddle-bags.
 ::
-:: EMBL-HLA-Submission is free software: you can redistribute it and/or modify
+:: saddle-bags is free software: you can redistribute it and/or modify
 :: it under the terms of the GNU Lesser General Public License as published by
 :: the Free Software Foundation, either version 3 of the License, or
 :: (at your option) any later version.
 ::
-:: EMBL-HLA-Submission is distributed in the hope that it will be useful,
+:: saddle-bags is distributed in the hope that it will be useful,
 :: but WITHOUT ANY WARRANTY; without even the implied warranty of
 :: MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 :: GNU Lesser General Public License for more details.
 ::
 :: You should have received a copy of the GNU Lesser General Public License
-:: along with EMBL-HLA-Submission. If not, see <http://www.gnu.org/licenses/>.
+:: along with saddle-bags. If not, see <http://www.gnu.org/licenses/>.
 
 :: Version 1.0
 

diff --git a/MakeExecutables.sh b/MakeExecutables.sh
@@ -1,19 +1,18 @@
-# This file is part of EMBL-HLA-Submission.
+# This file is part of saddle-bags.
 #
-# EMBL-HLA-Submission is free software: you can redistribute it and/or modify
+# saddle-bags is free software: you can redistribute it and/or modify
 # it under the terms of the GNU Lesser General Public License as published by
 # the Free Software Foundation, either version 3 of the License, or
 # (at your option) any later version.
 #
-# EMBL-HLA-Submission is distributed in the hope that it will be useful,
+# saddle-bags is distributed in the hope that it will be useful,
 # but WITHOUT ANY WARRANTY; without even the implied warranty of
 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 # GNU Lesser General Public License for more details.
 #
 # You should have received a copy of the GNU Lesser General Public License
-# along with EMBL-HLA-Submission. If not, see <http://www.gnu.org/licenses/>.
+# along with saddle-bags. If not, see <http://www.gnu.org/licenses/>.
 
-# Version 1.0
 
 # This isn't working in it's current state.  The spec file is apparently just for windows, 
 # it's still pulling in windows DLLs.  

diff --git a/README.md b/README.md
@@ -20,7 +20,7 @@ To set up the environment in anaconda:
 
 Linux/Mac:  
 ```
-conda create --name AlleleSubEnvironment biopython six  
+conda create --name AlleleSubEnvironment biopython six pycurl 
 source activate AlleleSubEnvironment  
 pip install pyinstaller packaging  
 source deactivate  

diff --git a/Run_allele_submission.bat b/Run_allele_submission.bat
@@ -1,21 +1,21 @@
-:: This file is part of EMBL-HLA-Submission.
+:: This file is part of saddle-bags.
 ::
-:: EMBL-HLA-Submission is free software: you can redistribute it and/or modify
+:: saddle-bags is free software: you can redistribute it and/or modify
 :: it under the terms of the GNU Lesser General Public License as published by
 :: the Free Software Foundation, either version 3 of the License, or
 :: (at your option) any later version.
 ::
-:: EMBL-HLA-Submission is distributed in the hope that it will be useful,
+:: saddle-bags is distributed in the hope that it will be useful,
 :: but WITHOUT ANY WARRANTY; without even the implied warranty of
 :: MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 :: GNU Lesser General Public License for more details.
 ::
 :: You should have received a copy of the GNU Lesser General Public License
-:: along with EMBL-HLA-Submission. If not, see <http://www.gnu.org/licenses/>.
+:: along with saddle-bags. If not, see <http://www.gnu.org/licenses/>.
 
 :: Version 1.0
 
 :: See the file README.MD for how to set up your anaconda environment.
 
-activate AlleleSubEnvironment && cd src && python AlleleSubmissionEMBL.py && deactivate
+activate AlleleSubEnvironment && cd src && python AlleleSubmissionMain.py && deactivate
 
diff --git a/Run_allele_submission.sh b/Run_allele_submission.sh
@@ -1,26 +1,24 @@
-# This file is part of EMBL-HLA-Submission.
+# This file is part of saddle-bags.
 #
-# EMBL-HLA-Submission is free software: you can redistribute it and/or modify
+# saddle-bags is free software: you can redistribute it and/or modify
 # it under the terms of the GNU Lesser General Public License as published by
 # the Free Software Foundation, either version 3 of the License, or
 # (at your option) any later version.
 #
-# EMBL-HLA-Submission is distributed in the hope that it will be useful,
+# saddle-bags is distributed in the hope that it will be useful,
 # but WITHOUT ANY WARRANTY; without even the implied warranty of
 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 # GNU Lesser General Public License for more details.
 #
 # You should have received a copy of the GNU Lesser General Public License
-# along with EMBL-HLA-Submission. If not, see <http://www.gnu.org/licenses/>.
-
-# Version 1.0
+# along with saddle-bags. If not, see <http://www.gnu.org/licenses/>.
 
 # See the file README.MD for how to set up your anaconda environment.
 
 cd src
 
 source activate AlleleSubEnvironment
-python AlleleSubmissionEMBL.py
+python AlleleSubmissionMain.py
 source deactivate