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    11 repositories

    • abo-analysis

      Public
      Analysis of ABO MinION sequences
      Python
      •
      GNU General Public License v3.0
      •3•0•1•1•Updated Aug 15, 2024Aug 15, 2024

    • read-filter

      Public
      Filtering Fastq minion reads as a step in the analysis pipeline.
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 1, 2021Feb 1, 2021

    • saddle-bags

      Public
      Tool for generating EMBL-format HLA allele submissions
      Python
      •2•3•0•0•Updated Feb 14, 2020Feb 14, 2020

    • gendx-xml-parser

      Public
      A parser for Gendx formatted XML files. Attempts to create a consensus sequence.
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 27, 2020Jan 27, 2020

    • order-number-converter

      Public
      Swisslab requires order numbers in a different format, this is a simple utility for finding and replacing some order numbers.
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 27, 2020Jan 27, 2020

    • nanopore-prospector

      Public
      GUI Interface for analysis of MinION nanopore reads of HLA amplicon sequences
      Python
      •
      GNU General Public License v3.0
      •1•1•1•0•Updated Oct 10, 2019Oct 10, 2019

    • allele-wrangler

      Public archive
      For Wrangling HLA Alleles
      Python
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Sep 22, 2017Sep 22, 2017

    • punkin-chunker

      Public archive
      A tool for sorting and clustering reads by HLA locus or allele group
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Sep 22, 2017Sep 22, 2017

    • nit-picker

      Public archive
      A tool for preparing fastq reads from MinION. Combine reads, Generate read quality stats, and possibly demultiplex
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jun 13, 2017Jun 13, 2017

    • AlternativeSplicingAnalysis

      Public
      Analysis and Quantification of Alternatively Spliced MinION cDNA Reads using GMAP
      1•0•0•0•Updated Apr 21, 2017Apr 21, 2017

    • General-information

      Public
      This contains documentation and procedures
      0•0•2•0•Updated Jul 11, 2016Jul 11, 2016