A collection of awesome things regarding all omics.

Exome/Capture/RNASeq Pipeline Implementation using snakemake

Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis

Project Manager for NGS data analysis

Reconstruction and analysis of viral and host genomes at multi-organ level

A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis

Pipelines for NGS data preprocessing by the Bock lab and friends

A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads

SARS-CoV-2 Genome Assembler

A simple fastp-MultiQC nextflow pipeline

A fast, easy way to present complex bioinformatics pipelines to biologists

FASTQ-to-CodFreq pipeline for HIV-1 and SARS-CoV-2

Working example of snakemake tutorial using UAB Cheaha computing cluster via SLURM scheduler

Mapping, filtering, and data hub visualisation pipeline for DNase, ATAC, ChIP data

UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads

scripts associated with yam genome assembly

command line and desktop tool for microbial variant calling

A flexible, automation and pragmatic workflow tool to process the NGS data.

Protein Analysis and Classifier Toolkit