scitran/apply-canonical-xform

Reorient NIfTI data and metadata fields into RAS space by estimating and applying a canonical transform.

This Gear uses a compiled version of the VISTASOFT function niftiApplyCannonicalXform.

Example Usage

mkdir -p input/nifti && mkdir output
cp <nifti-file.nii.gz> input/nifti
docker run --rm -ti -v `pwd`/input:/flywheel/v0/input -v `pwd`/output:/flywheel/v0/output scitran/apply-canonical-xform