Dockerfile

# Create Flywheel Gear for apply-canonical-xform
#

# FROM ubuntu:trusty
FROM vistalab/mcr-v90
MAINTAINER Michael Perry <lmperry@stanford.edu>

# Install the MCR dependencies and some things we'll need and
RUN apt-get -qq update && apt-get -qq install -y \
    unzip \
    zip \
    xorg \
    wget \
    python \
    curl

# Download the MCR from Mathworks and silently install it
# RUN mkdir /mcr-install && \
#     mkdir /opt/mcr && \
#     cd /mcr-install && \
#     wget http://www.mathworks.com/supportfiles/downloads/R2015b/deployment_files/R2015b/installers/glnxa64/MCR_R2015b_glnxa64_installer.zip && \
#     cd /mcr-install && \
#     unzip -q MCR_R2015b_glnxa64_installer.zip && \
#     ./install -destinationFolder /opt/mcr -agreeToLicense yes -mode silent && \
#     cd / && \
#     rm -rf mcr-install
#
# # Configure environment variables for MCR
# ENV LD_LIBRARY_PATH /opt/mcr/v90/runtime/glnxa64:/opt/mcr/v90/bin/glnxa64:/opt/mcr/v90/sys/os/glnxa64
# ENV XAPPLRESDIR /opt/mcr/v90/X11/app-defaults

# Make directory for flywheel spec (v0)
ENV FLYWHEEL /flywheel/v0
RUN mkdir -p ${FLYWHEEL}

# Copy and configure run script and metadata code
COPY bin/gear_niftiApplyCanonicalXform ${FLYWHEEL}/gear_niftiApplyCanonicalXform
RUN chmod +x ${FLYWHEEL}/gear_niftiApplyCanonicalXform
COPY bin/run ${FLYWHEEL}/run
RUN chmod +x ${FLYWHEEL}/run
COPY manifest.json ${FLYWHEEL}/manifest.json
ADD https://raw.githubusercontent.com/scitran/utilities/daf5ebc7dac6dde1941ca2a6588cb6033750e38c/metadata_from_gear_output.py ${FLYWHEEL}/metadata_create.py
RUN chmod +x ${FLYWHEEL}/metadata_create.py

# Configure entrypoint
ENTRYPOINT ["/flywheel/v0/run"]