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61 Open 151 Closed
61 Open 151 Closed
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Issues list

Installation error in installing bio embedding package via pip
#247 opened Jul 14, 2024 by amalislam675
Can't install well to run bio_embed
#246 opened Jul 10, 2024 by Lsz-20
1
Not able to run and pip install bioembeddings
#245 opened Jun 25, 2024 by rmagesh148
5
Protocol prottrans_t5_bfd: HTTPError: HTTP Error 406: Not Acceptable
#244 opened May 3, 2024 by jiaming28
Can Word2Vec be used for 4, 5 and 6 kmer? If possible, which file I need to changed and which parameter. I am seeking Guidance on Adapting Word2Vec Code for 4kmer Sequences
#243 opened Feb 29, 2024 by faruk17035
Protocol prottrans_bert_bfd: OSError: Unable to load weights from pytorch checkpoint file for .catch/bio_embeddings/prottrans_bert_bfd/model_directory/pytorch_model.bin' at '.catch/bio_embeddings/prottrans_bert_bfd/model_directory/pytorch_model.bin'. If you tried to load a PyTorch model from a TF 2.0 checkpoint, please set from_tf=True.
#242 opened Jan 25, 2024 by Meng-AnunaAI
Cannot Import Any Embedder "load()" has been removed, use yaml = YAML(typ='rt') yaml.load(...)
#241 opened Jan 18, 2024 by wijuliano
Protocol esm1b: AttributeError: 'dict' object has no attribute 'startswith'
#240 opened Nov 22, 2023 by dvonkan
from where comes the models in "bio_embeddings/utilities /defaults.yml", where is docs, parameters, dataset ?
#239 opened Oct 18, 2023 by laraque
Protocol prottrans_t5_xl_u50: PermissionError: [Errno 13] Permission denied: 'C:\\Users\\user\\AppData\\Local\\Temp\\tmpk7e1m0jg'
#238 opened Sep 14, 2023 by jbattjes
1
Cant install bio_embeddings in colab
#236 opened Sep 5, 2023 by IliasGewr
4
AttributeError: 'dict' object has no attribute '__NUMPY_SETUP__'
#235 opened Jul 16, 2023 by VarianZhou
3D Protein Embeddings
#234 opened Jun 30, 2023 by ChatterjeeAyan
Error during first step - greenlet size changed, may indicate binary incompatibility.
#233 opened Apr 10, 2023 by igwill
1
Hard times trying to run the bindEmbed21 example.
#232 opened Mar 29, 2023 by Ravy-LFL
Can not install bioembedings on ubuntu? Please help
#231 opened Mar 21, 2023 by faruk17035
1
Can not install bio-embedding in wsl
#230 opened Mar 21, 2023 by faruk17035
2
Docker containers shutting down within a few seconds of starting
#228 opened Feb 14, 2023 by kthurimella
Custom embeddings
#225 opened Feb 3, 2023 by rhysnewell
OSError: Unable to open file (truncated file: eof = 63504384, sblock->base_addr = 0, stored_eof = 374434776)
#224 opened Jan 27, 2023 by gerdos
1
Protocol prottrans_t5_xl_u50: URLError: <urlopen error [Errno 113] No route to host>
#223 opened Dec 30, 2022 by Azai-yx
1
Update jax-unirep dependency version
#219 opened Nov 11, 2022 by fedorn
Add support for ESM-2 and ESMFold
#218 opened Nov 11, 2022 by fedorn
3
CUDA out of memory.
#217 opened Nov 4, 2022 by wenyuhaokikika
2
I want to know the configuration of the people who run successfully
#216 opened Nov 4, 2022 by sudo349
2
ProTip! What’s not been updated in a month: updated:<2024-10-26.