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Can not install bio-embedding in wsl #230

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faruk17035 opened this issue Mar 21, 2023 · 2 comments
Open

Can not install bio-embedding in wsl #230

faruk17035 opened this issue Mar 21, 2023 · 2 comments

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@faruk17035
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__pyx_f_5thinc_6linear_7avgtron_18AveragedPerceptron_update_weight_ftrl(__pyx_obj_5thinc_6linear_7avgtron_AveragedPerceptron*, __pyx_t_5thinc_8typedefs_feat_t, __pyx_t_5thinc_8typedefs_class_t, __pyx_t_5thinc_8typedefs_weight_t, int)’: thinc/linear/avgtron.cpp:7391:48: warning: taking address of packed member of ‘__pyx_t_5thinc_7structs_SparseArrayC’ may result in an unaligned pointer value [-Waddress-of-packed-member] 7391 | __pyx_f_5thinc_6linear_7avgtron_adam_update((&(__pyx_v_feat->curr[__pyx_v_i]).val), (&(__pyx_v_feat->mom1[__pyx_v_i]).val), (&(__pyx_v_feat->mom2[__pyx_v_i]).val), __pyx_v_self->time, (__pyx_v_feat->times[__pyx_v_i]).val, __pyx_v_grad, __pyx_v_self->learn_rate, __pyx_v_self->momentum); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ thinc/linear/avgtron.cpp:7391:88: warning: taking address of packed member of ‘__pyx_t_5thinc_7structs_SparseArrayC’ may result in an unaligned pointer value [-Waddress-of-packed-member] 7391 | __pyx_f_5thinc_6linear_7avgtron_adam_update((&(__pyx_v_feat->curr[__pyx_v_i]).val), (&(__pyx_v_feat->mom1[__pyx_v_i]).val), (&(__pyx_v_feat->mom2[__pyx_v_i]).val), __pyx_v_self->time, (__pyx_v_feat->times[__pyx_v_i]).val, __pyx_v_grad, __pyx_v_self->learn_rate, __pyx_v_self->momentum); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ thinc/linear/avgtron.cpp:7391:128: warning: taking address of packed member of ‘__pyx_t_5thinc_7structs_SparseArrayC’ may result in an unaligned pointer value [-Waddress-of-packed-member] 7391 | __pyx_f_5thinc_6linear_7avgtron_adam_update((&(__pyx_v_feat->curr[__pyx_v_i]).val), (&(__pyx_v_feat->mom1[__pyx_v_i]).val), (&(__pyx_v_feat->mom2[__pyx_v_i]).val), __pyx_v_self->time, (__pyx_v_feat->times[__pyx_v_i]).val, __pyx_v_grad, __pyx_v_self->learn_rate, __pyx_v_self->momentum); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/python3.10/Python.h:74, from thinc/linear/avgtron.cpp:4: thinc/linear/avgtron.cpp: In function ‘void __pyx_tp_dealloc_5thinc_6linear_7avgtron_AveragedPerceptron(PyObject*)’: /usr/include/python3.10/object.h:133:33: error: lvalue required as increment operand 133 | #define Py_REFCNT(ob) _Py_REFCNT(_PyObject_CAST_CONST(ob)) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ thinc/linear/avgtron.cpp:14031:7: note: in expansion of macro ‘Py_REFCNT’ 14031 | ++Py_REFCNT(o); | ^~~~~~~~~ /usr/include/python3.10/object.h:133:33: error: lvalue required as decrement operand 133 | #define Py_REFCNT(ob) _Py_REFCNT(_PyObject_CAST_CONST(ob)) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ thinc/linear/avgtron.cpp:14033:7: note: in expansion of macro ‘Py_REFCNT’ 14033 | --Py_REFCNT(o); | ^~~~~~~~~ In file included from /usr/include/python3.10/unicodeobject.h:1046, from /usr/include/python3.10/Python.h:83, from thinc/linear/avgtron.cpp:4: thinc/linear/avgtron.cpp: In function ‘int __Pyx_ParseOptionalKeywords(PyObject*, PyObject***, PyObject*, PyObject**, Py_ssize_t, const char*)’: /usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 261 | PyUnicode_WSTR_LENGTH(op) : \ | ^~~~~~~~~~~~~~~~~~~~~ thinc/linear/avgtron.cpp:15112:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15112 | (PyUnicode_GET_SIZE(*name) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject op) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:262:33: warning: ‘Py_UNICODE PyUnicode_AsUnicode(PyObject)’ is deprecated [-Wdeprecated-declarations] 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ thinc/linear/avgtron.cpp:15112:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15112 | (PyUnicode_GET_SIZE(*name) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:580:45: note: declared here 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE ) PyUnicode_AsUnicode( | ^~~~~~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject)’ is deprecated [-Wdeprecated-declarations] 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject)op) | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 264 | PyUnicode_WSTR_LENGTH(op))) | ^~~~~~~~~~~~~~~~~~~~~ thinc/linear/avgtron.cpp:15112:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15112 | (PyUnicode_GET_SIZE(*name) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject op) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject)’ is deprecated [-Wdeprecated-declarations] 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject)op) | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 261 | PyUnicode_WSTR_LENGTH(op) : \ | ^~~~~~~~~~~~~~~~~~~~~ thinc/linear/avgtron.cpp:15112:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15112 | (PyUnicode_GET_SIZE(*name) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject op) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:262:33: warning: ‘Py_UNICODE PyUnicode_AsUnicode(PyObject)’ is deprecated [-Wdeprecated-declarations] 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ thinc/linear/avgtron.cpp:15112:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15112 | (PyUnicode_GET_SIZE(*name) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:580:45: note: declared here 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE ) PyUnicode_AsUnicode( | ^~~~~~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject)’ is deprecated [-Wdeprecated-declarations] 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject)op) | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 264 | PyUnicode_WSTR_LENGTH(op))) | ^~~~~~~~~~~~~~~~~~~~~ thinc/linear/avgtron.cpp:15112:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15112 | (PyUnicode_GET_SIZE(*name) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject op) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject)’ is deprecated [-Wdeprecated-declarations] 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject)op) | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 261 | PyUnicode_WSTR_LENGTH(op) : \ | ^~~~~~~~~~~~~~~~~~~~~ thinc/linear/avgtron.cpp:15128:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15128 | (PyUnicode_GET_SIZE(*argname) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject op) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:262:33: warning: ‘Py_UNICODE PyUnicode_AsUnicode(PyObject)’ is deprecated [-Wdeprecated-declarations] 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ thinc/linear/avgtron.cpp:15128:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15128 | (PyUnicode_GET_SIZE(*argname) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:580:45: note: declared here 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE ) PyUnicode_AsUnicode( | ^~~~~~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject)’ is deprecated [-Wdeprecated-declarations] 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject)op) | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 264 | PyUnicode_WSTR_LENGTH(op))) | ^~~~~~~~~~~~~~~~~~~~~ thinc/linear/avgtron.cpp:15128:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15128 | (PyUnicode_GET_SIZE(*argname) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject op) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject)’ is deprecated [-Wdeprecated-declarations] 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject)op) | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 261 | PyUnicode_WSTR_LENGTH(op) : \ | ^~~~~~~~~~~~~~~~~~~~~ thinc/linear/avgtron.cpp:15128:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15128 | (PyUnicode_GET_SIZE(*argname) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject op) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:262:33: warning: ‘Py_UNICODE PyUnicode_AsUnicode(PyObject)’ is deprecated [-Wdeprecated-declarations] 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ thinc/linear/avgtron.cpp:15128:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15128 | (PyUnicode_GET_SIZE(*argname) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:580:45: note: declared here 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE ) PyUnicode_AsUnicode( | ^~~~~~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:451:61: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject)’ is deprecated [-Wdeprecated-declarations] 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject)op) | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 264 | PyUnicode_WSTR_LENGTH(op))) | ^~~~~~~~~~~~~~~~~~~~~ thinc/linear/avgtron.cpp:15128:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 15128 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : | ^~~~~~~~~~~~~~~~~~ /usr/include/python3.10/cpython/unicodeobject.h:446:26: note: declared here 446 | static inline Py_ssize_t PyUnicode_get_wstr_length(PyObject op) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~ error: command '/usr/bin/x86_64-linux-gnu-gcc' failed with exit code 1 [end of output] note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for thinc Running setup.py clean for thinc Building wheel for blis (setup.py): started Building wheel for blis (setup.py): still running... Building wheel for blis (setup.py): still running... Building wheel for blis (setup.py): still running... Building wheel for blis (setup.py): still running... Building wheel for blis (setup.py): still running... Building wheel for blis (setup.py): still running... Building wheel for blis (setup.py): still running... Building wheel for blis (setup.py): still running... Building wheel for blis (setup.py): finished with status 'error' error: subprocess-exited-with-error × python setup.py bdist_wheel did not run successfully. │ exit code: 1 ╰─> [1813 lines of output] BLIS_COMPILER? None /usr/lib/python3/dist-packages/pkg_resources/init.py:116: PkgResourcesDeprecationWarning: 1.1build1 is an invalid version and will not be supported in a future release warnings.warn( /usr/lib/python3/dist-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-3.10 creating build/lib.linux-x86_64-3.10/blis copying blis/about.py -> build/lib.linux-x86_64-3.10/blis copying blis/benchmark.py -> build/lib.linux-x86_64-3.10/blis copying blis/init.py -> build/lib.linux-x86_64-3.10/blis creating build/lib.linux-x86_64-3.10/blis/tests copying blis/tests/common.py -> build/lib.linux-x86_64-3.10/blis/tests copying blis/tests/test_dotv.py -> build/lib.linux-x86_64-3.10/blis/tests copying blis/tests/test_gemm.py -> build/lib.linux-x86_64-3.10/blis/tests copying blis/tests/init.py -> build/lib.linux-x86_64-3.10/blis/tests copying blis/cy.pyx -> build/lib.linux-x86_64-3.10/blis copying blis/py.pyx -> build/lib.linux-x86_64-3.10/blis copying blis/cy.pxd -> build/lib.linux-x86_64-3.10/blis copying blis/init.pxd -> build/lib.linux-x86_64-3.10/blis running build_ext unix py_compiler gcc {'LS_COLORS': 'rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:.tar=01;31:.tgz=01;31:.arc=01;31:.arj=01;31:.taz=01;31:.lha=01;31:.lz4=01;31:.lzh=01;31:.lzma=01;31:.tlz=01;31:.txz=01;31:.tzo=01;31:.t7z=01;31:.zip=01;31:.z=01;31:.Z=01;31:.dz=01;31:.gz=01;31:.lrz=01;31:.lz=01;31:.lzo=01;31:.xz=01;31:.zst=01;31:.tzst=01;31:.bz2=01;31:.bz=01;31:.tbz=01;31:.tbz2=01;31:.tz=01;31:.deb=01;31:.rpm=01;31:.jar=01;31:.war=01;31:.ear=01;31:.sar=01;31:.rar=01;31:.alz=01;31:.ace=01;31:.zoo=01;31:.cpio=01;31:.7z=01;31:.rz=01;31:.cab=01;31:.wim=01;31:.swm=01;31:.dwm=01;31:.esd=01;31:.jpg=01;35:.jpeg=01;35:.mjpg=01;35:.mjpeg=01;35:.gif=01;35:.bmp=01;35:.pbm=01;35:.pgm=01;35:.ppm=01;35:.tga=01;35:.xbm=01;35:.xpm=01;35:.tif=01;35:.tiff=01;35:.png=01;35:.svg=01;35:.svgz=01;35:.mng=01;35:.pcx=01;35:.mov=01;35:.mpg=01;35:.mpeg=01;35:.m2v=01;35:.mkv=01;35:.webm=01;35:.ogm=01;35:.mp4=01;35:.m4v=01;35:.mp4v=01;35:.vob=01;35:.qt=01;35:.nuv=01;35:.wmv=01;35:.asf=01;35:.rm=01;35:.rmvb=01;35:.flc=01;35:.avi=01;35:.fli=01;35:.flv=01;35:.gl=01;35:.dl=01;35:.xcf=01;35:.xwd=01;35:.yuv=01;35:.cgm=01;35:.emf=01;35:.ogv=01;35:.ogx=01;35:.aac=00;36:.au=00;36:.flac=00;36:.m4a=00;36:.mid=00;36:.midi=00;36:.mka=00;36:.mp3=00;36:.mpc=00;36:.ogg=00;36:.ra=00;36:.wav=00;36:.oga=00;36:.opus=00;36:.spx=00;36:*.xspf=00;36:', 'HOSTTYPE': 'x86_64', 'LESSCLOSE': '/usr/bin/lesspipe %s %s', 'LANG': 'C.UTF-8', 'OLDPWD': '/home/matt/repos/flame-blis', 'VIRTUAL_ENV': '/home/matt/repos/wheelwright/env3.6', 'USER': 'matt', 'PWD': '/home/matt/repos/cython-blis', 'HOME': '/home/matt', 'NAME': 'LAPTOP-OMKOB3VM', 'XDG_DATA_DIRS': '/usr/local/share:/usr/share:/var/lib/snapd/desktop', 'SHELL': '/bin/bash', 'TERM': 'xterm-256color', 'SHLVL': '1', 'LOGNAME': 'matt', 'PATH': '/home/matt/repos/wheelwright/env3.6/bin:/tmp/google-cloud-sdk/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/mnt/c/Users/matt/Documents/cmder/vendor/conemu-maximus5/ConEmu/Scripts:/mnt/c/Users/matt/Documents/cmder/vendor/conemu-maximus5:/mnt/c/Users/matt/Documents/cmder/vendor/conemu-maximus5/ConEmu:/mnt/c/Python37/Scripts:/mnt/c/Python37:/mnt/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/iCLS:/mnt/c/Program Files/Intel/Intel(R) Management Engine Components/iCLS:/mnt/c/Windows/System32:/mnt/c/Windows:/mnt/c/Windows/System32/wbem:/mnt/c/Windows/System32/WindowsPowerShell/v1.0:/mnt/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/DAL:/mnt/c/Program Files/Intel/Intel(R) Management Engine Components/DAL:/mnt/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/IPT:/mnt/c/Program Files/Intel/Intel(R) Management Engine Components/IPT:/mnt/c/Program Files/Intel/WiFi/bin:/mnt/c/Program Files/Common Files/Intel/WirelessCommon:/mnt/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common:/mnt/c/ProgramData/chocolatey/bin:/mnt/c/Program Files/Git/cmd:/mnt/c/Program Files/LLVM/bin:/mnt/c/Windows/System32:/mnt/c/Windows:/mnt/c/Windows/System32/wbem:/mnt/c/Windows/System32/WindowsPowerShell/v1.0:/mnt/c/Windows/System32/OpenSSH:/mnt/c/Program Files/nodejs:/mnt/c/Users/matt/AppData/Local/Microsoft/WindowsApps:/mnt/c/Users/matt/AppData/Local/Programs/Microsoft VS Code/bin:/mnt/c/Users/matt/AppData/Roaming/npm:/snap/bin:/mnt/c/Program Files/Oracle/VirtualBox', 'PS1': '(env3.6) \[\e]0;\u@\h: \w\a\]${debian_chroot:+($debian_chroot)}\[\033[01;32m\]\u@\h\[\033[00m\]:\[\033[01;34m\]\w\[\033[00m\]\$ ', 'VAGRANT_HOME': '/home/matt/.vagrant.d/', 'OMP_NUM_THREADS': '1', 'LESSOPEN': '| /usr/bin/lesspipe %s', '': '/home/matt/repos/wheelwright/env3.6/bin/python'} gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/config/generic/bli_cntx_init_generic.c -o /tmp/tmp5sr9t6kf/bli_cntx_init_generic.o -O3 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/config/haswell/bli_cntx_init_haswell.c -o /tmp/tmp5sr9t6kf/bli_cntx_init_haswell.o -O3 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/config/penryn/bli_cntx_init_penryn.c -o /tmp/tmp5sr9t6kf/bli_cntx_init_penryn.o -O2 -fomit-frame-pointer -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/config/piledriver/bli_cntx_init_piledriver.c -o /tmp/tmp5sr9t6kf/bli_cntx_init_piledriver.o -O2 -fomit-frame-pointer -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/config/sandybridge/bli_cntx_init_sandybridge.c -o /tmp/tmp5sr9t6kf/bli_cntx_init_sandybridge.o -O3 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/config/steamroller/bli_cntx_init_steamroller.c -o /tmp/tmp5sr9t6kf/bli_cntx_init_steamroller.o -O2 -fomit-frame-pointer -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/kernels/zen/1/bli_amaxv_zen_int.c -o /tmp/tmp5sr9t6kf/bli_amaxv_zen_int.o -O3 -mavx2 -mfma -mfpmath=sse -march=core-avx2 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/kernels/zen/1/bli_axpyv_zen_int.c -o /tmp/tmp5sr9t6kf/bli_axpyv_zen_int.o -O3 -mavx2 -mfma -mfpmath=sse -march=core-avx2 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/kernels/zen/1/bli_axpyv_zen_int10.c -o /tmp/tmp5sr9t6kf/bli_axpyv_zen_int10.o -O3 -mavx2 -mfma -mfpmath=sse -march=core-avx2 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/kernels/zen/1/bli_dotv_zen_int.c -o /tmp/tmp5sr9t6kf/bli_dotv_zen_int.o -O3 -mavx2 -mfma -mfpmath=sse -march=core-avx2 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/kernels/zen/1/bli_dotv_zen_int10.c -o /tmp/tmp5sr9t6kf/bli_dotv_zen_int10.o -O3 -mavx2 -mfma -mfpmath=sse -march=core-avx2 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/kernels/zen/1/bli_dotxv_zen_int.c -o /tmp/tmp5sr9t6kf/bli_dotxv_zen_int.o -O3 -mavx2 -mfma -mfpmath=sse -march=core-avx2 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/kernels/zen/1/bli_scalv_zen_int.c -o /tmp/tmp5sr9t6kf/bli_scalv_zen_int.o -O3 -mavx2 -mfma -mfpmath=sse -march=core-avx2 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/kernels/zen/1/bli_scalv_zen_int10.c -o /tmp/tmp5sr9t6kf/bli_scalv_zen_int10.o -O3 -mavx2 -mfma -mfpmath=sse -march=core-avx2 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/kernels/zen/1f/bli_axpyf_zen_int_8.c -o /tmp/tmp5sr9t6kf/bli_axpyf_zen_int_8.o -O3 -mavx2 -mfma -mfpmath=sse -march=core-avx2 -fPIC -std=c99 -D_POSIX_C_SOURCE=200112L -DBLIS_VERSION_STRING="0.5.0-6" -DBLIS_IS_BUILDING_LIBRARY -Iinclude/linux-x86_64 -I./frame/3/ -I./frame/ind/ukernels/ -I./frame/1m/ -I./frame/1f/ -I./frame/1/ -I./frame/include -I/tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/_src/include/linux-x86_64 gcc -c /tmp/pip-install-3cmy2iaa/blis_bc69545eec184f7f8c6102448d031fbe/blis/src/kernels/zen/1f/bli_dotxf_zen_int_8.c -o /tmp/tmp5sr9t6kf/bli_dotxf_zen_int

@ddofer
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ddofer commented Jul 18, 2023

I am encountering the same issue, installing on WSL via pip install. Conda environment.

(Huge list of errors, involving GCC?) - then:

` error: command '/usr/bin/gcc' failed with exit code 1
[end of output]

    note: This error originates from a subprocess, and is likely not a problem with pip.
    ERROR: Failed building wheel for blis
    Running setup.py clean for blis
  Failed to build preshed thinc blis
  ERROR: Could not build wheels for preshed, thinc, blis, which is required to install pyproject.toml-based projects      [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error`

@FabioPfae
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FabioPfae commented Nov 29, 2023

What worked for me, is using an older python version 3.8 in a conda environment. It is important to use "conda deactivate" to deactivate the "base" environment before you create a new environment, this solved the following error for me:

/usr/lib/python3/dist-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.

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