0.0.3
0.0.3 (November 26, 2019)
A new release with some added features but primarily a good bit of re-arranging
in the primary abagen.get_expression_data()
workflow. Notable changes
include:
- New parameters
region_agg
,agg_metric
,sample_norm
, andgene_norm
(the latter of which supplantsdonor_norm
), controlling how microarray samples are normalized and aggregated across donors; - Large reductions in memory usage (#130), such that the primary workflow should only use ~2GB of RAM at its peak; and,
- Migration to CircleCI for all testing purposes!
Special thanks to Vincent Bazinet (@VinceBaz), Ellen Wang (@Ellen8780), Romke Hannema (@rhannema), and Anthony Gifuni (@gifuni) for their contributions!
- [REF] Adds option to suppress norm warnings (#132), @rmarkello
- [ENH,REF] Adds new
region_agg
parameter (#131), @rmarkello - [REF] Massive reduction in memory usage (#130), @rmarkello
- [FIX] Solves pandas bug with max_variance method (#128), @gifuni
- [STY] Fixes trailing whitespace (#129), @rmarkello
- [FIX] Fixes strange TypeError for pc_loading (#1), @rmarkello
- [REF] Ensures integer DataFrame when
return_count=True
(#127), @rhannema - [ENH] Add fetcher for donor info (#126), @Ellen8780
- [REF,ENH] Modifies and adds normalization procedures (#119), @rmarkello
- [TEST] Updating CircleCI build (#122), @rmarkello
- [TEST] TravisCI --> CircleCI (#121), @rmarkello
- [REF] Removes
.get_data()
nibabel calls (#120), @rmarkello - [FIX] Specify
engine='python'
in pandas queries (#117), @VinceBaz