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[DOC] Update README [skip ci]
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rmarkello committed Mar 25, 2021
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8 changes: 3 additions & 5 deletions README.rst
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Expand Up @@ -49,6 +49,7 @@ for processing and preparing the AHBA microarray expression data for analysis.

Installation requirements
-------------------------

Currently, ``abagen`` works with Python 3.6+ and requires a few dependencies:

- nibabel
Expand Down Expand Up @@ -80,8 +81,7 @@ At it's core, using ``abagen`` is as simple as:
>>> import abagen
>>> expression = abagen.get_expression_data('myatlas.nii.gz')
where ``'myatlas.nii.gz'`` points to a Nifti file that defines a brain
parcellation in MNI space.
where ``'myatlas.nii.gz'`` points to a brain parcellation file.

This function can also be called from the command line with:

Expand Down Expand Up @@ -131,9 +131,7 @@ Reannotated gene information located at ``abagen/data/reannotated.csv.gz`` and
individualized donor parcellations for the Desikan-Killiany atlas located at
``abagen/data/native_dk`` are taken from Arnatkevičiūte et al., 2018 and are
separately licensed under the `CC BY 4.0`_; these data can also be found on
`figshare <https://figshare.com/s/441295fe494375aa0c13>`__. Individualized
parcellations have been renumbered to match the MNI-space atlas originally
shipped with ``abagen``.
`figshare <https://figshare.com/s/441295fe494375aa0c13>`__.

Corrected MNI coordinates used to match AHBA tissues samples to MNI space
located at ``abagen/data/corrected_mni_coordinates.csv`` are taken from the
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8 changes: 3 additions & 5 deletions abagen/info.py
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Installation requirements
-------------------------
Currently, ``abagen`` works with Python 3.6+ and requires a few dependencies:
- nibabel
Expand Down Expand Up @@ -83,8 +84,7 @@
>>> import abagen
>>> expression = abagen.get_expression_data('myatlas.nii.gz') # doctest: +SKIP
where ``'myatlas.nii.gz'`` points to a Nifti file that defines a brain
parcellation in MNI space.
where ``'myatlas.nii.gz'`` points to a brain parcellation file.
This function can also be called from the command line with:
Expand Down Expand Up @@ -134,9 +134,7 @@
individualized donor parcellations for the Desikan-Killiany atlas located at
``abagen/data/native_dk`` are taken from Arnatkevičiūte et al., 2018 and are
separately licensed under the `CC BY 4.0`_; these data can also be found on
`figshare <https://figshare.com/s/441295fe494375aa0c13>`__. Individualized
parcellations have been renumbered to match the MNI-space atlas originally
shipped with ``abagen``.
`figshare <https://figshare.com/s/441295fe494375aa0c13>`__.
Corrected MNI coordinates used to match AHBA tissues samples to MNI space
located at ``abagen/data/corrected_mni_coordinates.csv`` are taken from the
Expand Down

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