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Added casting to string of slurm_stderr and jobinfo_stdout #48

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Feb 2, 2018
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Added casting to string of slurm_stderr and jobinfo_stdout #48

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4 changes: 2 additions & 2 deletions sciluigi/slurm.py
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Original file line number Diff line number Diff line change
Expand Up @@ -191,14 +191,14 @@ def log_slurm_info(self, slurm_stderr):
salloc: Job allocation 5836263 has been revoked.
'''

matches = re.search('[0-9]+', slurm_stderr)
matches = re.search('[0-9]+', str(slurm_stderr))
if matches:
jobid = matches.group(0)

# Write slurm execution time to audit log
cmd = 'sacct -j {jobid} --noheader --format=elapsed'.format(jobid=jobid)
(_, jobinfo_stdout, _) = self.ex_local(cmd)
sacct_matches = re.findall('([0-9\:\-]+)', jobinfo_stdout)
sacct_matches = re.findall('([0-9\:\-]+)', str(jobinfo_stdout))

if len(sacct_matches) < 2:
log.warn('Not enough matches from sacct for task %s: %s',
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