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    21 repositories

    • track-image-experiments

      Public
      Track metadata for imaging experiments
      JavaScript
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Jan 10, 2025Jan 10, 2025

    • smito-analysis

      Public
      This repository contains code for SMITO data analysis
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

    • smito-pipeline

      Public
      Single-MITOchondrion (SMITO) SNV Pipeline
      Shell
      •
      Artistic License 2.0
      •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

    • aegle_patch_viewer

      Public
      Python
      •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • VisCello.celegans

      Public
      R
      •1•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • VisCello

      Public
      Viscello for Visualization of Single Cell Data
      R
      •9•23•2•0•Updated Oct 5, 2024Oct 5, 2024

    • chex-analysis

      Public
      This repository contains code for CHEX-seq data analysis.
      R
      •
      Mozilla Public License 2.0
      •0•0•0•0•Updated Jul 31, 2024Jul 31, 2024

    • chex-seq

      Public
      This is the computational pipeline for CHEX-seq data
      Perl
      •
      Mozilla Public License 2.0
      •0•0•0•0•Updated Jul 31, 2024Jul 31, 2024

    • microscope-utility

      Public
      Automation workflow for Kim Lab Microscope.
      Python
      •0•1•0•0•Updated Nov 30, 2023Nov 30, 2023

    • PIC-snATAC

      Public
      A package for Paired Insertion Counting for snATAC-seq data.
      R
      •
      Other
      •0•0•0•0•Updated Nov 12, 2023Nov 12, 2023

    • jc-0324

      Public
      JavaScript
      •0•0•0•0•Updated Jan 24, 2023Jan 24, 2023

    • kidneycellexplorer

      Public
      R
      •5•8•1•0•Updated Nov 5, 2022Nov 5, 2022

    • resistant-fit-norm-bibe-2020

      Public
      Supporting material and reproducing the experiments of the paper "Resistant Fit Regression Normalization for Single-cell RNA-seq Data" of BIBE 2020
      Jupyter Notebook
      •0•0•0•0•Updated Mar 1, 2022Mar 1, 2022

    • Argos

      Public
      R/shiny interface for interactive of data wrangling in TIPeR Project
      R
      •0•1•3•0•Updated Nov 15, 2021Nov 15, 2021

    • Subspace

      Public
      MATLAB
      •0•0•0•0•Updated Aug 26, 2021Aug 26, 2021

    • Theia

      Public
      R/shiny interface for Kim Lab RNA-seq Pipeline Quality Control
      R
      •0•2•5•0•Updated Mar 22, 2021Mar 22, 2021

    • PIVOT

      Public
      Platform for Interactive analysis and Visualization Of Transcriptomics data
      HTML
      •16•27•3•0•Updated Jun 9, 2020Jun 9, 2020

    • PESS

      Public
      Full-scale protein fold recognition using 1NN
      Python
      •
      Other
      •0•1•0•0•Updated Nov 11, 2016Nov 11, 2016

    • nofold

      Public
      Motif finder for RNA secondary structures
      Python
      •
      Other
      •1•5•1•0•Updated Oct 2, 2016Oct 2, 2016

    • VERSE

      Public
      A versatile and efficient RNA-Seq read counting tool
      C
      •
      GNU General Public License v3.0
      •3•16•3•0•Updated Mar 30, 2016Mar 30, 2016

    • Glo-DB

      Public
      Genomic Locus Operations Database
      Java
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 3, 2014Nov 3, 2014