Repositories list

• dragon_submission_LLM_data_extractor

  Public
  Submission to the DRAGON challenge (dragon.grand-challenge.org) using LLM_data_extractor

  Jupyter Notebook

  •

  Apache License 2.0

  •2•0•0•0•Updated Jan 17, 2025Jan 17, 2025

• llm_extractinator

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Jan 17, 2025Jan 17, 2025

• rse-grand-challenge-forge

  Public
  Generation of challenge packs

  Python

  •

  Apache License 2.0

  •0•0•2•1•Updated Jan 17, 2025Jan 17, 2025

• website-content

  Public
  This repository stores all the content for the diag websites.

  TeX

  •

  MIT License

  •75•6•28•13•Updated Jan 17, 2025Jan 17, 2025

• Literature

  Public
  The literature generated and cited by the group

  TeX

  •3•0•0•0•Updated Jan 17, 2025Jan 17, 2025

• rse-gcapi

  Public
  Python client for the grand-challenge.org API

  Python

  •

  Apache License 2.0

  •3•2•7•3•Updated Jan 16, 2025Jan 16, 2025

• nnUNet-for-pathology

  Public
  Adapted nnUNet framework with additional features to suit the requirements for pathology applications

  Python

  •

  Apache License 2.0

  •1.8k•11•0•0•Updated Jan 16, 2025Jan 16, 2025

• picai_eval

  Public
  Evaluation of 3D detection and diagnosis performance —geared towards prostate cancer detection in MRI.

  detectionrocdiagnosis+ 4precision-recallfrocmetricsevaluation

  Python

  •

  Apache License 2.0

  •10•21•0•0•Updated Jan 16, 2025Jan 16, 2025

• ai4h-course

  Public
  0•0•0•0•Updated Jan 15, 2025Jan 15, 2025

• rse-pyswot

  Public
  Python implementation of JetBrains/swot

  Python

  •

  Apache License 2.0

  •1•1•0•0•Updated Jan 14, 2025Jan 14, 2025

• dragon_prep

  Public
  Preprocessing scripts for the DRAGON benchmark

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Jan 13, 2025Jan 13, 2025

• rse-cirrus-benchmark-suite

  Public
  A small playwright-based CIRRUS benchmark suite, meant to detect speedups or slowdowns.

  grand-challenge

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Jan 10, 2025Jan 10, 2025

• bodyct-sybil-lung-cancer-risk-2

  Public
  Deep Learning for Lung Cancer Risk Prediction using LDCT

  Python

  •

  MIT License

  •45•0•0•2•Updated Jan 10, 2025Jan 10, 2025

• rse-panimg

  Public
  Conversion of medical images to MHA and TIFF.

  Python

  •

  Apache License 2.0

  •5•13•5•0•Updated Jan 6, 2025Jan 6, 2025

• cobra-streamingclam

  Public
  Lightstream implementation of the StreamingCLAM model

  Python

  •

  GNU General Public License v3.0

  •4•0•0•0•Updated Dec 30, 2024Dec 30, 2024

• pathology-whole-slide-learning

  Public
  library for weak whole slide learning with attention to compress and classify whole slide images

  Python

  •

  Apache License 2.0

  •1•0•1•0•Updated Dec 22, 2024Dec 22, 2024

• pathology-whole-slide-packer

  Public
  extracts tissue sections from one or multiple whole slide images and combines them into a single new slide removing excess white space

  Python

  •

  Apache License 2.0

  •1•5•0•0•Updated Dec 20, 2024Dec 20, 2024

• bodyct-dram

  Public
  Python

  •

  MIT License

  •1•1•0•0•Updated Dec 20, 2024Dec 20, 2024

• bodyct-dram-emph-subtype

  Public
  Python

  •

  MIT License

  •1•0•0•0•Updated Dec 20, 2024Dec 20, 2024

• dinov2

  Public
  Adaption of DINOv2 for computational pathology

  Python

  •864•0•0•0•Updated Dec 19, 2024Dec 19, 2024

• ULS23

  Public
  Repository for the Universal Lesion Segmentation Challenge '23

  challengeartificial-intelligencemedical-imaging+ 1ct

  Python

  •4•29•2•0•Updated Dec 19, 2024Dec 19, 2024

• MHubAI_models

  Public
  Stores the MHub models dockerfiles and scripts.

  Python

  •

  MIT License

  •16•1•0•0•Updated Dec 19, 2024Dec 19, 2024

• deepops

  Public
  Tools for building GPU clusters

  Shell

  •

  BSD 3-Clause "New" or "Revised" License

  •333•0•0•0•Updated Dec 12, 2024Dec 12, 2024

• LEOPARD-challenge-baseline

  Public
  Python

  •0•1•0•0•Updated Dec 12, 2024Dec 12, 2024

• picai_prep

  Public
  Preprocessing 3D medical images and image archives —geared towards prostate cancer detection in MRI.

  datasetsmhaimage-archives+ 2dicommedical-imaging

  Python

  •

  Apache License 2.0

  •6•19•0•0•Updated Dec 10, 2024Dec 10, 2024

• Report-Guided-Annotation

  Public
  Report Guided Annotation

  detectionautomatic-annotation

  Python

  •

  MIT License

  •6•19•2•0•Updated Dec 2, 2024Dec 2, 2024

• demo-challenge-pack

  Public
  Challenge pack for the demo challenge

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 28, 2024Nov 28, 2024

• pathology-hooknet-tls

  Public
  Jupyter Notebook

  •

  MIT License

  •2•12•10•0•Updated Nov 26, 2024Nov 26, 2024

• pathology-whole-slide-data

  Public
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

  pythondeep-learningiterator+ 13wsdpathologywhole-slide-imagingwsicomputational-pathologywsmwsa+ 6

  Python

  •

  Apache License 2.0

  •27•96•5•1•Updated Nov 21, 2024Nov 21, 2024

• QualityClassifier

  Public
  Python

  •

  Apache License 2.0

  •1•0•0•0•Updated Nov 7, 2024Nov 7, 2024