Repositories list

• TIDAL

  Public
  Transposon Insertion and Depletion AnaLyzer

  C

  •8•1•0•0•Updated Oct 17, 2015Oct 17, 2015

• biocontext

  Public
  BioContext is a text mining system for extracting information about molecular processes in biomedical articles.

  Java

  •1•1•0•0•Updated Oct 13, 2015Oct 13, 2015

• getm

  Public
  GETM is a tool which is capable of extracting information about the expression of genes from biomedical literature

  Java

  •2•1•0•0•Updated Oct 13, 2015Oct 13, 2015

• linnaeus

  Public
  Species name recognition and normalization software.

  Java

  •

  Other

  •1•1•0•0•Updated Oct 13, 2015Oct 13, 2015

• abyss

  Public
  de novo sequence assembler

  C++

  •

  Other

  •109•2•0•0•Updated Oct 11, 2015Oct 11, 2015

• snpgenie

  Public
  Perl software for estimating evolutionary parameters from pooled next-generation sequencing SNP data

  Perl

  •

  GNU General Public License v3.0

  •37•1•0•0•Updated Oct 10, 2015Oct 10, 2015

• Roary

  Public
  Pan genome pipeline

  Perl

  •

  Other

  •191•0•0•0•Updated Oct 8, 2015Oct 8, 2015

• soapdenovo2

  Public
  SOAPdenovo2 case study website

  Shell

  •6•0•0•0•Updated Oct 8, 2015Oct 8, 2015

• QoRTs

  Public
  Quality of RNA-Seq Toolset

  HTML

  •14•0•0•0•Updated Oct 5, 2015Oct 5, 2015

• nextflu

  Public
  Real-time tracking of influenza evolution

  Python

  •

  GNU Affero General Public License v3.0

  •19•1•0•0•Updated Sep 28, 2015Sep 28, 2015

• epicseg

  Public
  Chromatin segmentation in R

  HTML

  •14•0•0•0•Updated Sep 22, 2015Sep 22, 2015

• pogs

  Public
  Proximal Operator Graph Solver

  C++

  •39•0•0•0•Updated Sep 16, 2015Sep 16, 2015

• KLTepigenome

  Public
  Uncovering correlated variability in epigenomic datasets using the Karhunen-Loeve Transform

  R

  •

  Artistic License 2.0

  •2•0•0•0•Updated Sep 15, 2015Sep 15, 2015

• ProFET

  Public
  ProFET: Protein Feature Engineering Toolkit for Machine Learning

  Python

  •

  GNU General Public License v3.0

  •29•0•0•0•Updated Sep 14, 2015Sep 14, 2015

• wgfast

  Public
  Whole genome focused array SNP typer

  Python

  •5•0•0•0•Updated Sep 11, 2015Sep 11, 2015

• igb-mi-bundle

  Public
  A plugin to map genomic regions to protein interactions in the Integrated Genomic Browser.

  Java

  •3•0•0•0•Updated Sep 1, 2015Sep 1, 2015

• TCGA_RNASeq_Clinical

  Public
  HTML

  •

  MIT License

  •40•0•0•0•Updated Aug 27, 2015Aug 27, 2015

• Bandage

  Public
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

  C++

  •

  GNU General Public License v3.0

  •98•0•0•0•Updated Aug 26, 2015Aug 26, 2015

• sowhat

  Public
  Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)

  Perl

  •

  GNU General Public License v3.0

  •4•0•0•0•Updated Aug 22, 2015Aug 22, 2015

• oddt

  Public
  Open Drug Discovery Toolkit

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •120•0•0•0•Updated Aug 18, 2015Aug 18, 2015

• atSNP

  Public
  Large-scale testing for SNP-motif interactions.

  R

  •8•0•0•0•Updated Aug 18, 2015Aug 18, 2015

• karect

  Public
  KAUST Assembly Read Error Correction Tool

  C++

  •

  GNU General Public License v2.0

  •7•0•0•0•Updated Aug 15, 2015Aug 15, 2015

• binning

  Public
  Code for statistical binning and related scripts

  Perl

  •4•0•0•0•Updated Aug 14, 2015Aug 14, 2015

• phylodyn

  Public
  R

  •15•0•0•0•Updated Aug 13, 2015Aug 13, 2015

• description-extractor

  Public
  HGVS variant description extractor

  C++

  •

  MIT License

  •4•0•0•0•Updated Aug 13, 2015Aug 13, 2015

• sct

  Public
  SCT: Suite of tools for atomistic modelling of SAS data

  Python

  •

  Apache License 2.0

  •3•0•0•0•Updated Aug 12, 2015Aug 12, 2015

• damidseq_pipeline

  Public
  An automated pipeline for processing DamID sequencing datasets

  Perl

  •

  GNU General Public License v2.0

  •9•0•0•0•Updated Aug 8, 2015Aug 8, 2015

• BackCLIP

  Public
  Tool to identify common RNA background in PAR-CLIP datasets

  Python

  •

  GNU General Public License v2.0

  •1•0•0•0•Updated Aug 5, 2015Aug 5, 2015

• Package-GFE

  Public
  Software package of the genotype-frequency estimator (GFE)

  Prolog

  •

  GNU General Public License v2.0

  •1•0•0•0•Updated Jul 28, 2015Jul 28, 2015

• fermikit

  Public
  De novo assembly based variant calling pipeline for Illumina short reads

  TeX

  •22•0•0•0•Updated Jul 23, 2015Jul 23, 2015