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Merge pull request #1700 from obophenotype/fix-IRI-not-in-idrange-kid…
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…ney_collecting_duct_intercalated_B

Fixed IRI to be in correct range for 'kidney collecting duct beta-intercalated cell'
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bvarner-ebi authored Sep 15, 2022
2 parents 7be8384 + 1715564 commit 8626a73
Showing 1 changed file with 17 additions and 4 deletions.
21 changes: 17 additions & 4 deletions src/ontology/cl-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -2754,6 +2754,7 @@ Declaration(Class(obo:CL_4030001))
Declaration(Class(obo:CL_4030002))
Declaration(Class(obo:CL_4030003))
Declaration(Class(obo:CL_4030004))
Declaration(Class(obo:CL_4030005))
Declaration(Class(obo:CL_4030006))
Declaration(Class(obo:CL_4030007))
Declaration(Class(obo:CL_4030008))
Expand Down Expand Up @@ -22999,15 +23000,17 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:22527717"^^xsd:string) o
AnnotationAssertion(rdfs:label obo:CL_0019032 "intestinal tuft cell"@en)
EquivalentClasses(obo:CL_0019032 ObjectIntersectionOf(obo:CL_0002204 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001277)))

# Class: obo:CL_0700009 (kidney collecting duct beta-intercalated cell)
# Class: obo:CL_0700009 (obsolete kidney collecting duct beta-intercalated cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:24051376"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:31300091"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:32016094"^^xsd:string) obo:IAO_0000115 obo:CL_0700009 "A renal beta-intercalated cell that is part of the cortical collecting duct. The medullary collecting duct does not contain the renal beta-intercalated cell type."^^xsd:string)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:24051376"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:31300091"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:32016094"^^xsd:string) obo:IAO_0000115 obo:CL_0700009 "OBSOLETE. A renal beta-intercalated cell that is part of the cortical collecting duct. The medullary collecting duct does not contain the renal beta-intercalated cell type."^^xsd:string)
AnnotationAssertion(obo:IAO_0100001 obo:CL_0700009 obo:CL_4030005)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> obo:CL_0700009 <https://orcid.org/0000-0002-1773-2692>)
AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_0700009 "2022-08-26T10:31:29Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:32016094"^^xsd:string) oboInOwl:hasExactSynonym obo:CL_0700009 "B-IC"^^xsd:string)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:31300091"^^xsd:string) oboInOwl:hasExactSynonym obo:CL_0700009 "kidney collecting duct intercalated cell type B"^^xsd:string)
AnnotationAssertion(rdfs:label obo:CL_0700009 "kidney collecting duct beta-intercalated cell")
EquivalentClasses(obo:CL_0700009 ObjectIntersectionOf(obo:CL_0002201 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004203)))
AnnotationAssertion(rdfs:comment obo:CL_0700009 "Created with IRI in incorrect ID range"^^xsd:string)
AnnotationAssertion(rdfs:label obo:CL_0700009 "obsolete kidney collecting duct beta-intercalated cell")
AnnotationAssertion(owl:deprecated obo:CL_0700009 "true"^^xsd:boolean)

# Class: obo:CL_1000001 (retrotrapezoid nucleus neuron)

Expand Down Expand Up @@ -28660,6 +28663,16 @@ AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_4030004 "2022-02-18T1
AnnotationAssertion(rdfs:label obo:CL_4030004 "thymic nurse cell")
SubClassOf(obo:CL_4030004 obo:CL_0002293)

# Class: obo:CL_4030005 (kidney collecting duct beta-intercalated cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:24051376"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:31300091"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:32016094"^^xsd:string) obo:IAO_0000115 obo:CL_4030005 "A renal beta-intercalated cell that is part of the cortical collecting duct. The medullary collecting duct does not contain the renal beta-intercalated cell type."^^xsd:string)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> obo:CL_4030005 <https://orcid.org/0000-0002-1773-2692>)
AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_4030005 "2022-09-14T16:19:11Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:32016094"^^xsd:string) oboInOwl:hasExactSynonym obo:CL_4030005 "B-IC"^^xsd:string)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:31300091"^^xsd:string) oboInOwl:hasExactSynonym obo:CL_4030005 "kidney collecting duct intercalated cell type B"^^xsd:string)
AnnotationAssertion(rdfs:label obo:CL_4030005 "kidney collecting duct beta-intercalated cell")
EquivalentClasses(obo:CL_4030005 ObjectIntersectionOf(obo:CL_0002201 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004203)))

# Class: obo:CL_4030006 (fallopian tube secretory epithelial cell)

AnnotationAssertion(Annotation(<http://purl.org/dc/terms/contributor> <https://orcid.org/0000-0002-0819-0473>) Annotation(oboInOwl:hasDbXref "https://doi.org/10.1186/1477-7827-7-129"^^xsd:string) Annotation(oboInOwl:hasDbXref "https://doi.org/10.3390/cells8080933"^^xsd:string) Annotation(oboInOwl:hasDbXref "https://www.proteinatlas.org/learn/dictionary/normal/fallopian+tube"^^xsd:string) obo:IAO_0000115 obo:CL_4030006 "An epithelial cell that is part of the fallopian tube epithelium that secretes mucous fluid and oviduct-specific products through the stimulation of estrogen and luteinizing hormone. The fallopian tube secretory cell has approximately the same height as the ciliated cell and is usually a more narrow columnar cell. The nucleus is ovoid and perpendicular to the long axis of the cell. The chromatin is more dense and the nucleolus smaller than that seen in the ciliated cell."^^xsd:string)
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