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Update ODK to 1.3.0 #272

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Update ODK to 1.3.0 #272

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shawntanzk
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ran an update to latest ODK version

@shawntanzk shawntanzk requested a review from hkir-dev February 24, 2022 10:23
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current error:

cp -r tmp/dosdp/*.yaml ../patterns/dosdp-patterns
cp: cannot stat 'tmp/dosdp/*.yaml': No such file or directory
make: *** [Makefile:479: update_patterns] Error 1
rm ../patterns/data/default/CCN202002013_class.tsv ../patterns/data/default/CCN201912[131](https://github.com/obophenotype/brain_data_standards_ontologies/runs/5481161215?check_suite_focus=true#step:7:131)_class.tsv ../patterns/data/default/CCN201912132_class.tsv ../patterns/data/default/CS1908210_class.tsv

Trying to figure out where tmp/dosdp/*.yaml comes from

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shawntanzk commented Mar 10, 2022

current error

make: *** [Makefile:144: reports/validate_profile_owl2dl_bdso.owl.txt] Error 1
rm ../patterns/data/default/CCN202002013_class.tsv ../patterns/data/default/CCN201912131_class.tsv ../patterns/data/default/CCN201912132_class.tsv ../patterns/data/default/CS1908210_class.tsv
Error: Process completed with exit code 2.

whole bunch of these before that:

Cannot pun between properties: <http://purl.obolibrary.org/obo/PCL_0010062> [AnnotationAssertion(<http://purl.obolibrary.org/obo/PCL_0010062> <http://purl.obolibrary.org/obo/PCL_0012584> "0.748502994"^^xsd:string) in OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/bdso.owl>) VersionIRI(<http://purl.obolibrary.org/obo/pcl/releases/2022-03-10/bdso.owl>))]

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When making reports/validate_profile_owl2dl_bdso.owl.txt in local machine:

warn [uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl] [context: ] Illegal redeclarations of entities: reuse of entity {} in punning not allowed {}
make: *** [Makefile:504: ../patterns/data/default/CCN201912132_class_homologous.ofn] Error 1

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