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Improve config and reduce fulltest #163
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a89cf5f
Improve fulltest
LouisLeNezet a9eafb3
Update CHANGELOG
LouisLeNezet 79b7dfb
Revert extension change
LouisLeNezet 7a36d04
Revert extension change
LouisLeNezet 14d8aee
Fix multiqc file names
298296b
Update CHANGELOG
21656bb
Update snapshot
8d97f74
Update gawk
LouisLeNezet 8e271b4
Update CHANGELOG
LouisLeNezet 1f6c784
Fix configuration
LouisLeNezet 98fbeaa
Update sample samplesheet
LouisLeNezet 275d31d
Fix input truth vcf usage
LouisLeNezet 69306d9
Fix glimpse2 concordance usage
LouisLeNezet 0d90bb2
Reverse modification
9b630c3
Update glimpse2 concordance
d1e289c
Update java version
4c846d0
Update CHANGELOG.md
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Why this change? I am confused as the reason behind this.
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I mean, we are going to launch a completely different AWS mega test from the one before.
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The aim is to reduce the computational cost of the megatest as much as possible.
The
glimpse2
software as less steps (no variant calling) and should also be more computationally efficient.I'll add it to the changelog