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NeuroPython workshop #165

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merged 16 commits into from
Sep 22, 2024
Merged

NeuroPython workshop #165

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79191b3
navis.read_ivscc: basic IVSCC feature extraction
schlegelp Sep 21, 2024
f21c106
tortuosity: by default, use segments as-is
schlegelp Sep 21, 2024
fb9becf
Neurons: implement __add/sub__ magic methods for offsetting coordinates
schlegelp Sep 22, 2024
07f32f7
MeshNeuron: add soma_pos setter
schlegelp Sep 22, 2024
99ce0d6
ivscc_features: add progress bar
schlegelp Sep 22, 2024
6a598a7
plotting: allow passing categorical palette for numerical data
schlegelp Sep 22, 2024
18707dc
plot2d: change default method back to 2d
schlegelp Sep 22, 2024
d92aa2e
resample_skeleton: resample arbitrary numeric and non-numerical columns
schlegelp Sep 22, 2024
8989525
plotting: use linewidth parameter for skeleton to mesh conversion
schlegelp Sep 22, 2024
820cc63
plot2d: fix error when passing a non-matplotlib palette
schlegelp Sep 22, 2024
dc97277
plot2d: fix issue when color_by is name of both neuron AND node property
schlegelp Sep 22, 2024
a896673
plot2d: allow passing `soma` as a dict to customize the soma appearance
schlegelp Sep 22, 2024
644ead8
cable_length: new "mask" parameter
schlegelp Sep 22, 2024
519f8ab
prune_twigs: new "mask" parameter
schlegelp Sep 22, 2024
06836a0
MeshNeuron: fix .soma_pos setter
schlegelp Sep 22, 2024
031bc6b
prune_twigs: fix `mask` when `precise=True`
schlegelp Sep 22, 2024
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1 change: 1 addition & 0 deletions docs/api.md
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Expand Up @@ -314,6 +314,7 @@ Functions to analyze morphology.
| [`navis.persistence_vectors()`][navis.persistence_vectors] | {{ autosummary("navis.persistence_vectors") }} |
| [`navis.strahler_index()`][navis.strahler_index] | {{ autosummary("navis.strahler_index") }} |
| [`navis.segment_analysis()`][navis.segment_analysis] | {{ autosummary("navis.segment_analysis") }} |
| [`navis.ivscc_features()`][navis.ivscc_features] | {{ autosummary("navis.ivscc_features") }} |
| [`navis.sholl_analysis()`][navis.sholl_analysis] | {{ autosummary("navis.sholl_analysis") }} |
| [`navis.tortuosity()`][navis.tortuosity] | {{ autosummary("navis.tortuosity") }} |
| [`navis.betweeness_centrality()`][navis.betweeness_centrality] | {{ autosummary("navis.betweeness_centrality") }} |
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