Microbiome time series manipulation with miaTime

Using the package

This R package can be used to analyse time series data for microbial communities. The package is part of miaverse, and is based on the TreeSummarizedExperiment data container.

See the package homepage for example workflows.

Installation

Bioc-release

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("miaTime")

Bioc-devel

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("miaTime")

GitHub

remotes::install_github("microbiome/miaTime")

Contributions and acknowledgments

You can find us online from Gitter.

Contributions are very welcome through issues and pull requests at the development site. We follow a git flow kind of approach. Development version should be done against the main branch and then merged to release for release. (https://guides.github.com/introduction/flow/)

Kindly cite this work. For citation details, see R command

citation("miaTime")  

Code of conduct

The project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.